BAC Information

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BAC

Clone NameMSMg01-055A14
Chromosome1 (Build37)
Map Location 195,425,903 - 195,426,187
singlet/doubletsinglet
Overlap genenone
Upstream geneHhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
Downstream geneLOC667208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055A14.T7 (MSMg01no055_a14.b1)MSMg01-055A14.TJ (MSMg01no055_a14.g1)
ACCAG282813AG282814
length753892
length of high quality
(start - end)
285 (66 - 350)46 (76 - 121)
definitionCHROMAT_FILE: MSMg01no055_a14.b1 PHD_FILE: MSMg01no055_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:21 2005CHROMAT_FILE: MSMg01no055_a14.g1 PHD_FILE: MSMg01no055_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCAAGAGGATCCGCGGAATT
CAGATTTACCCGAGGTAAAATGGAACAGATGACAAGTGGTGTTCCAACCT
CTGCCAAGACTCGTGCACTCCACAGTACTATCCAGGACAGTATGAACCCA
CTGATTAAAATAAGGGGGCTCCAGCAAGATTTTGCTGAAAGGACCCTGAT
ATAGCTGTCTCTTGTGAGGCTATGCTGGTCTGGCAAACACAGAAGTGGAT
GCTCACAGTCAGCTATTGGATGGAACACAGAGCCCCCAATGGAGGAGCAA
GAGAAAGCACCCAATGAGTTAAAGGGGTCTGCAATCCTATAGGTGGAACA
ACTTTTTGAACTAACCAGCACCCCCCAAAGCTCGTGTCTCTAACTGTATA
TGTATCAGAAGATGTCCTAGTCGGCCATCATTGGGAAGAGAGGCCCCTTG
GTCTTGCAAACTTTATATGCCCCAGTACAGGGGAATGTTAAGGCCAAGAA
GTTGGAGTGCTCGGGTAAGGCGTGTGCCTACTCTCCTCCCCCCCCTCTTT
TCTGCCTCTCCTACCCCCACCCCCTATTTTATTTCCTCCCATCTCCTTCC
TCCCTCATTACCCCAATTTTTTAATACTTATCCAACACATTTTCTCCCTC
CCCCCTCCCATTATTTTAATACACCCACCACTATCATCTCAATATTACCA
TTACTTACCTATTTATTACTATTAGTTATCATACTTTCTTCTTTATTTTC
ACG
CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTTCAAGGAGAGGAATGGAGG
GGAGAAGAGAGGGAGAGGAGTTCCCCCCCCCCCCCGCGCTTTGCACCCCG
GTTTTCCTTTCCTTTCGTCCTCTGTCCTCCCGCCTTCTTCCTTGTCCGTC
CCCTCTCCCCTCCGCTTTTCTCTGCTCTCTCCCGCGGTCCCTAGTTTCCC
CCCCCTCTTTTCCCCCTTTCTCCTTCTTTGTTTCGACTCACTCGTGCTTC
ATCCCCACCTTAGCATCGACCCTAACCGTGTGAGGACGCACCTTTGTTTT
TTTTCGCCCTACGCTCCGCGGTCCTTGCTCACACCTTTCCTCGGCTCCCC
CCCCCCCGCCCTGTTCCCTTCCCCCCTCCGCCTCTGTCCCCTTTGTCCCG
GTTTCTTTTTCTCCCGCCCTCCCCCTAGGTTTGTTTCCTCTGTCGCGCTT
CGCCTCTCTTCCTTTTTCGTTTTTGCCTCGCCGCGTTCTACTGGTTGTTT
GCTGTCTCCCCCTCTTTTCCCCGCCTCTCCTCGTGGCTTGTTCCGGATTC
ATTTTTATTCTCCTCCCGCGTTCTCCATTTTCTCGCCCGCGGCCCCGCCG
CTCCTTTACTATATTTTACGCCTCCGCCGGTTCCCTATTTCGTTATTGTT
CCGCCCCGTTTTTCCCATTCCGCGCTTCTCCGATCGCTTCCCCTTATTTC
ATTTAATGCCTCCACGACCACGTCCTGCGCATCTTTTCTTACAATGTGTT
CCCTTGATTTTCACCTCCCCTAATATCCCTTTTCATCCACCCCTTTCTCA
CCCTTCAATAACTAGTCGCCCGTGTGTGTTCTTCCGCCGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_a14.b1 MSMg01no055_a14.b1 CHROMAT_FILE:
MSMg01no055_a14.b1 PHD_FILE: MSMg01no055_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:21 2005
         (285 letters)



>mm_chr1_195425883_195426567
          Length = 685

 Score =  497 bits (257), Expect = e-145
 Identities = 278/285 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaaatggaacagatgacaagtggtgttccaacctctgccaagactcgtgcactccacag 60
           |||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||
Sbjct: 305 taaaatggaacagatgacaactggtgttccaacctctgccaagactcgtacaatccacag 246

                                                                       
Query: 61  tactatccaggacagtatgaacccactgattaaaataagggggctccagcaagattttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tactatccaggacagtatgaacccactgattaaaataagggggctccagcaagattttgc 186

                                                                       
Query: 121 tgaaaggaccctgatatagctgtctcttgtgaggctatgctggtctggcaaacacagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tgaaaggaccctgatatagctgtctcttgtgaggctatgctggtctggcaaacacagaag 126

                                                                       
Query: 181 tggatgctcacagtcagctattggatggaacacagagcccccaatggaggagcaagagaa 240
           |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 125 tggatgctcacagtcagctattggatggaacatagggcccccaatggaggagcaagagaa 66

                                                        
Query: 241 agcacccaatgagttaaaggggtctgcaatcctataggtggaaca 285
           ||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 65  agcacccaaggagttaaaggggtctgcaaccctataggtggaaca 21


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)