ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATATGAGGAATTGTTCAATTTTTCTTGTGTTGCTGTCTACTATAAT
GCTAAATACTGGATGCCAAGGTCTCATTGCCCTCAGGGAAAAAGGGGGAA
AAGAGACCCTTATATCAAGGATATATATATATATATATATCCTTGCTTCT
TAACTTAAAATTGTTGTTTAAGTAATGATGCCTACAGTCTGTAACTGGGC
ACAACAGGGGTACTCACAGCTTCAGTTCCAGAGCAGAGGAGAGAAAAAAG
AGAGAGGAAGATGCCATGGGGTAGATAGATCATGAGAACATGACCATGAG
GCCTGAAAAGTTGAAGTAAGAAAGACCATGGCAGAACATGGCCAATTATA
TCTCGGTGTTAATGACAGGAAGATGGACAAAATAAATAGATGATTGATAT
CTGCCCAGGTCTAATGGTATTAATGCTTTTATTTCAACAATTTCAGAACT
AAATGATCAAAGGTATGGTAAAAATACTCACCAATATTTATGACAAAGAA
TAAGCAAACGTTTTAAGATAATTAGACAGAATCCATTTCGATGACAACCC
CTGTCTCTTCTGTGATCAGTGTTAGGAGACACAGTGGAAATTTCTAAGTG
GCACTTAAATCAAGTAAAAAAATTTTGAGACAAGAAAGAATTTATTATCT
TGCT

ACGATTGTGCCAATACGTTTTAATTAAAATCATCAAAGTACGTCGTCAAG
AAGGGGGAGTATCGGGGAAGCGGTTTCCAAAAAGGGGCGATCGCGCGATT
TTCCCAAAAAGGGTTTTCAATAGAGAGGTAGAGGTAAAGCGGAAAAAAAT
AAGACATACCCCATCGGGGTTTCTGACCGTTTAACTTATTAGTCATCGTA
TTCATGGGACTTGCTGATTGTGATCCCGACTAGAGACCGGTATTTAGACA
ACGTTCCCCTTCCTTTTTTGGTCCCCGCTGATTTCTCGCGATTTACATCT
TTCTTATGGAAAAATTGTTATTTGTTTATGAAATGAATGTTGCACCATGC
GATGGAAAGAGAAAGATATAGGGAATATTTTTTTACGTTCGCGCGGATAT
TATGTAAAAGATTACTAAATACTGAGTTCGATTAGTTGTTGAGTACTTGG
TCACCATCTTTATTTTTTCCCTTTTTCTTTTCCGCTTACTAGGATTTCTT
TCTTTCTTTTGAAACCATCGGTTTTGTTTTGTTGCGTTTTTCCTCCGGGG
AATATTTTTATTTTAATTCACCCCTTTTTTCCGGTCTTCGCTGTGTTCTT
TGGGTTCATTATTTATGGGCCGCGCGTTTAGTTTTTACCCCCTTGGCGGC
ATATGATTTATTTTATATTCCGCCTTCCTCCGATCGACTGTCGGTATTAT
TCGCCGGATTATGGCTTATGCCGGCTATTCTGTTCCTTTCACCTTTTTGC
GATATAACGTCCACAACAAACACGTTAGAGGTATTCGAACTGATTAAATG
GTGATGGTTGAGTTTGTCTCAATATCAATAATGGCGTTTTCATTTCGGAT
CCTTTAATCACACTTCGGTAAGAAATAGGCGCGTATTTCGTTATTAAGAT
GGAATG

Query= MSMg01no055_e10.b1 MSMg01no055_e10.b1 CHROMAT_FILE:
MSMg01no055_e10.b1 PHD_FILE: MSMg01no055_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:39 2005
         (661 letters)



>mm_chr1_114368677_114369737
          Length = 1061

 Score = 1247 bits (645), Expect = 0.0
 Identities = 655/659 (99%), Gaps = 2/659 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatatgaggaattgttcaatttttcttgtgttgctgtctactataatgctaaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattccatatgaggaattgttcaatttttcttgtgttgctgtctactataatgctaaat 262

                                                                       
Query: 65  actggatgccaaggtctcattgccctcagggaaaaagggggaaaagagacccttatatca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 actggatgccaaggtctcattgccctcagggaaaaagggggaaaagagacccttatatca 322

                                                                       
Query: 125 aggatatatatatatatatatat--ccttgcttcttaacttaaaattgttgtttaagtaa 182
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 323 aggatatatatatatatatatatatccttgcttcttaacttaaaattgttgtttaagtaa 382

                                                                       
Query: 183 tgatgcctacagtctgtaactgggcacaacaggggtactcacagcttcagttccagagca 242
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgatgcctacagtctgtagctgggcacaacaggggtactcacagcttcagttccagagca 442

                                                                       
Query: 243 gaggagagaaaaaagagagaggaagatgccatggggtagatagatcatgagaacatgacc 302
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 443 gaggagagaaaaaagagagaggacgatgccatggggtagatagatcatgagaacatgacc 502

                                                                       
Query: 303 atgaggcctgaaaagttgaagtaagaaagaccatggcagaacatggccaattatatctcg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atgaggcctgaaaagttgaagtaagaaagaccatggcagaacatggccaattatatctcg 562

                                                                       
Query: 363 gtgttaatgacaggaagatggacaaaataaatagatgattgatatctgcccaggtctaat 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtgttaatgacaggaagatggacaaaataaatagatgattgatatctgcccaggtctaat 622

                                                                       
Query: 423 ggtattaatgcttttatttcaacaatttcagaactaaatgatcaaaggtatggtaaaaat 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ggtattaatgcttttatttcaacaatttcagaactaaatgatcaaaggtatggtaaaaat 682

                                                                       
Query: 483 actcaccaatatttatgacaaagaataagcaaacgttttaagataattagacagaatcca 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 actcaccaatatttatgacaaagaataagcaaacgttttaagataattagacagaatcca 742

                                                                       
Query: 543 tttcgatgacaacccctgtctcttctgtgatcagtgttaggagacacagtggaaatttct 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tttcgatgacaacccctgtctcttctgtgatcagtgttaggagacacagtggaaatttct 802

                                                                      
Query: 603 aagtggcacttaaatcaagtaaaaaaattttgagacaagaaagaatttattatcttgct 661
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aagtggcacttaaatcaagtaaaaaaattttgagacaagaaagaatttattatcttgct 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)