BAC Information

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BAC

Clone NameMSMg01-055F16
Chromosome1 (Build37)
Map Location 191,814,140 - 191,814,383
singlet/doubletsinglet
Overlap genenone
Upstream geneKctd3, Kcnk2, LOC100042424, LOC100039307, Cenpf, Ptpn14, LOC100042438, Smyd2
Downstream geneProx1, LOC100039394, EG666975, Rps6kc1, Angel2, Vash2, LOC100039445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055F16.T7 (MSMg01no055_f16.b1)MSMg01-055F16.TJ (MSMg01no055_f16.g1)
ACCAG283048AG283049
length699711
length of high quality
(start - end)
244 (68 - 311)185 (100 - 284)
definitionCHROMAT_FILE: MSMg01no055_f16.b1 PHD_FILE: MSMg01no055_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:44 2005CHROMAT_FILE: MSMg01no055_f16.g1 PHD_FILE: MSMg01no055_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTTTTTCTTAAGATACTCAGCTATTCAACTTTTACTACAGAAACTTT
GAAATTCAAAAAGAAAAAATAATGTAAGTTTTTGAAGGACATGTGTTGCT
GTAGGTGAGCCCGTTAATTAAAAGTGATTGCCTGCTAGGAAATCAGACTT
TAAAAAGTTTCACGAATTTATTAGAGCCTGAAGGTATCTTTGTATGCACA
GAGCCTCGCGAGCCGTCTATGCCATTTGGTTTCAGATCTGCTTAAAGCCT
GCCGACACTCCTTTTATAGCCAACAGCTCGGCTAGTATGCGTATGTGTTT
TGTTTTTTTGAACTCCCCCCCCCACACACTAATGAAGCCTTAGCGGGGGT
GTTTGCCGAATAGACTACTTATCTAATTTCCTATAAATTAGCGGTGTCTT
TTTTTTTTAACCACAGATTAATGTTTTAGGGAAAGCTGCTTCCTTGGGGG
TTGTGGAGAAGAAATGCATTGTAGAATAGTGGGCTTTATTTTTGCATACT
GAAAAAAACACCCTGTATCCCTGAGAGCCACATTGTGTCAGAAAAAGCTA
AAAAGGACTTTTAATAATATTTTAAATGTCTCATTTCATAATAAAATGAT
ATGTAATTACCCAATCAAATTAATAAGCAAATTATTACTCCTGCCTAAA
GGGTGTTTCGGAAGGTGAGGNNGAACNANANAAGGTTACANGAGTTACAG
TGGCTNCTCCNANNCNGNANGNGCACGCTTGGGNGGGNGNGCATTCCCAT
GTGTGTACATGCCTGTAGAGACCAGAGGTCAACCATGGGTATCGTTCCTC
AGGAACCATTCCCCTCCCTCATTGTTTTGAACAGGGTTTCTCACTGGCTT
GGACTTCTGATCCGAGCAAGCCTGTTGTTATCTTATCTCTTCCACTGGGT
TTACACGTTGCCACCAAGCCGAGTTCTTGAGTTCAAACTCATTTCGTCAC
TTTCACGGGGCCAACACATTACTGACAGGGCTATCTTTTCTCCCCCCCCC
CCTCTTACTTTAAGATGGGTTTTATAGGCAAAGACCTCTAGGAAAAACCT
GACTTTATTTTCTCCTGATGTTATTTTCATCTGGCCTTTTTTGTTTTGTC
TTGCTTTTAATCCTTGCATGACCTGTCCTTGATGCAGATTTTGTTTGCAG
TTCCTCATGTCTTCATCGCTGAGGTAATACACCCGATGCTAATGCTATGA
TGGGTCCTTTTCACACATTACAGAGAACCTGCATCAAGCCCCCCTTTCGT
CTCTCTTCTGCCACGCAGGTCACCTTTTTTTTTTTGTTTTTTACCCATGC
TGGAACCCACCCCCAAATCTTCGTGAAGATAATCATTCCCCCCCCTTCGT
ACAACTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_f16.b1 MSMg01no055_f16.b1 CHROMAT_FILE:
MSMg01no055_f16.b1 PHD_FILE: MSMg01no055_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:44 2005
         (244 letters)



>mm_chr1_191813940_191814583
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcagctattcaacttttactacagaaactttgaaattcaaaaagaaaaaataatgtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actcagctattcaacttttactacagaaactttgaaattcaaaaagaaaaaataatgtaa 385

                                                                       
Query: 61  gtttttgaaggacatgtgttgctgtaggtgagcccgttaattaaaagtgattgcctgcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtttttgaaggacatgtgttgctgtaggtgagcccgttaattaaaagtgattgcctgcta 325

                                                                       
Query: 121 ggaaatcagactttaaaaagtttcacgaatttattagagcctgaaggtatctttgtatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggaaatcagactttaaaaagtttcacgaatttattagagcctgaaggtatctttgtatgc 265

                                                                       
Query: 181 acagagcctcgcgagccgtctatgccatttggtttcagatctgcttaaagcctgccgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acagagcctcgcgagccgtctatgccatttggtttcagatctgcttaaagcctgccgaca 205

               
Query: 241 ctcc 244
           ||||
Sbjct: 204 ctcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)