Query= MSMg01no055_g02.b1 MSMg01no055_g02.b1 CHROMAT_FILE:
MSMg01no055_g02.b1 PHD_FILE: MSMg01no055_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:46 2005
(589 letters)
>mm_chr15_14851802_14852790
Length = 989
Score = 901 bits (466), Expect = 0.0
Identities = 511/526 (97%), Gaps = 2/526 (0%)
Strand = Plus / Minus
Query: 5 gaattctcaagaattcaccggagaatgggaaggccctaaattaaagcattatgtgttctg 64
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 899 gaattctcaagaaatcaccggagaatgggaaggctctaaattaaagcattatgtgttctg 840
Query: 65 gctaggaggtaccacatgtattgacataaaaccttactgaaatcttggtctctctttgtc 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 gctaggaggtagcacatgtattgacataaaaccttactgaaatcttggtctctctttgtc 780
Query: 125 attattagggaactagctacaataaagaaaacagctgcagtattcatttaatataactag 184
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 779 attattagggaactagctacaataaagaaaacagctgtagtattcatttaatataactag 720
Query: 185 ttatactgctaattaatttaatataacttcatgcaattatattaaaattaccttttatat 244
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 719 ttatactgctaattaatttaatttaacttcatgcaattatattaaaattaccttttatat 660
Query: 245 gagattttaataattatatcctaaatagaagttttttatataatgcagaaagcttaaata 304
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 659 gagatttttataattatatcctggatagaagttttttatataatgcagaaagcttaaata 600
Query: 305 ctaactcttgtatt-tccatgtgtgagctgttaaattatattcatagtttttgattacta 363
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ctaactcttgtattat-catgtgtgagctgttaaattatattcatagtttttgattacta 541
Query: 364 tctactgctgattgttctttaatttgttccttgataatttatttatcagcttttgtatga 423
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 540 tctactgctgattgttctttaatttgttccttgatagtttatttatcagcttttgtatga 481
Query: 424 actttaaggacacaatttaaccacaatatattatgtatttttatctgatagattaatttt 483
||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 480 actttaagggcacaatttaaccacaatatattatgtatttttatctgataaattgatttt 421
Query: 484 ttagacattaatttgtctttctttattcctcaaatatttttctttg 529
||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttagatattaatttgtctttctttattcctcaaatatttttctttg 375
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no055_g02.g1 MSMg01no055_g02.g1 CHROMAT_FILE:
MSMg01no055_g02.g1 PHD_FILE: MSMg01no055_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:46 2005
(304 letters)
>mm_chr1_45056282_45056988
Length = 707
Score = 393 bits (203), Expect = e-114
Identities = 280/307 (91%), Gaps = 3/307 (0%)
Strand = Plus / Minus
Query: 1 atgttacaacagtgcaaaatcgaaattatttttctttaatttctatatgaaatggttagt 60
|||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 507 atgttataacagtgcaaaattgaaattatttttctttaattcctatatgaaatggttagt 448
Query: 61 tagtatcattaaatcaaaatttaagtttatctaatttatccagagaagaattatatgtgt 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||
Sbjct: 447 tagtatcattaaatcaaaatttaagtttatctaatttatccagggaagaattagatatgt 388
Query: 121 gcag---tttaaactgacatgtcaatcatagggagatgaataagatgaccaagagcagag 177
|||| | ||||||||||||||||||| ||||||||| | |||||||||||||||||||
Sbjct: 387 gcaggagtgtaaactgacatgtcaatcaaagggagatgcagaagatgaccaagagcagag 328
Query: 178 tattaattgtaatgaataccttgaaagcaataacatgaaggaattgtgaagccatgactc 237
||||| ||||||||||||||||||| |||||| |||||||||||||| ||||||||| ||
Sbjct: 327 tattagttgtaatgaataccttgaaggcaatagcatgaaggaattgtcaagccatgattc 268
Query: 238 accttttggtattatgtttttcccctttttaatgtatcaattatattgatattacttttc 297
|||||||||||||| |||| || ||||||||||||||||| || ||||| ||||||| |
Sbjct: 267 accttttggtattacgtttgtctgctttttaatgtatcaatgatgttgatgttactttcc 208
Query: 298 agaaaag 304
| |||||
Sbjct: 207 ataaaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 707
Length adjustment: 9
Effective length of query: 295
Effective length of database: 698
Effective search space: 205910
Effective search space used: 205910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
