BAC Information

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BAC

Clone NameMSMg01-055J04
Chromosome1 (Build37)
Map Location 62,542,196 - 62,542,507
singlet/doubletsinglet
Overlap genePard3b
Upstream genenone
Downstream geneLOC667592, Nrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055J04.T7 (MSMg01no055_j04.b1)MSMg01-055J04.TJ (MSMg01no055_j04.g1)
ACCAG283208AG283209
length708781
length of high quality
(start - end)
317 (43 - 359)---
definitionCHROMAT_FILE: MSMg01no055_j04.b1 PHD_FILE: MSMg01no055_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:00 2005CHROMAT_FILE: MSMg01no055_j04.g1 PHD_FILE: MSMg01no055_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAATACACTCAGGACCCTAGAGGCCAACATTGATTTTTGAAGAGTAG
GTAGGTAAGCATATTGAACTGGATCCAAAATTCTGTGGCACTTTTCTCTA
CAAGTCATTTGCTAATTCACAGATGGCACAGAATCAAATGCTAAGAAAAT
GGTCAGAGTGCAGTGACTAAGATACTTTGAGCTAAGCAGAGTTCTTGGCA
TTCTTGTGGAATTGGAATTAGAAGCCAGAATTCAAAACCTTCTAAGGAAG
AAAGACCCCTGTAACAAACCCATCTTTCTAGGTAGGGTCTCAGATAGGAT
ACATCTTATTAATACTACACCACCTCCCCTCAACTAGCTTTCATGGCTCT
AAAAGAGGGTATAACATTTTACAAAAAAGGAGACCACCAACAGTTTGACA
CAGCCACTGAACCACATCAATGACCAATATGGCACCACAAACCTACAGGC
GCAATAGTCGCATGAATATTTTGGCTGTAACCAACAGCTCTTTAATTGGA
CTTAAGACCTGTTCAACAAGAAGGATACAATGATGAGCAATGGAAACCTA
GCTAACGAGCCAATCCTAGTGAAATTATGGCTATGGGAGGAAAATCTATA
ATCCCTAACTTACTAAACCAGGATAATCCCTAACAACATTTCTATTATCA
TTTGTTCT
TGCGACGCTCAGGGTGGTGCGCTTTCTTCCGGNCCCCCGCGGACTTCCCT
GCTATGAATGGGTGGCCTGGCGGCCGCCTGGTTTTCCGAGCCGAGGAACN
ANAGAAGGTTTGCGAGAGAAGGGGNANANNANNNACGGACANNNCGAAAG
GAAAGGGCNATGACCCGNAANGNNAAACACCACGNACNAAGNCCGAAACC
AAGACNAGAAAGGCGGGGCCACCAACGACCAGAAACGCAAGCCCAGCCAC
CCGGCAACCCCAGACNCCGCACCGCNAGACCCCCAGCAAGCCAGGCGAGA
AAGCNCGGAGAACNAAAAGCACCCCAACNCCGCCACACCCCGGCCCACAA
AGAGAGATTTTTTTTTTTGCCAAGCGGCCCACCACCAGGNCGCACGGTTT
TTTTCCCCGCACCGCACCTACATAGGGTTGAGCTCTAAGTGATAGATAGC
ATGAGCTACGGTGAAGATAGGCTCTCCCATCAGTTGCTATGTGTTGCTCG
CCAGTTACCCACCGAAGCATATTGGCGAGCGGGACTCCGCTGCTGTCCGA
CTGTCTGCTCCTGTTCTCCCCTCTTTTTCTGGGGCCGGTCTTACCCTTTA
AGCGAACGGCCCTCCCGCATTGCCCCCCTTTTTTTCTTCCCCCCCCCCGC
CTTGGGCGTATTCCCTACCCCCCCTGGCTGCCTCTTATGGGTGTCCCTAT
ATCCTCCTCAATTTTCCCCCGCCCCCACAATTTCCTTTCTCTCGTTTGCC
CGGGCGCGGCCCTTTAGTTCTCGCCCCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_j04.b1 MSMg01no055_j04.b1 CHROMAT_FILE:
MSMg01no055_j04.b1 PHD_FILE: MSMg01no055_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:00 2005
         (317 letters)



>mm_chr1_62541992_62542708
          Length = 717

 Score =  572 bits (296), Expect = e-168
 Identities = 308/312 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaatacactcaggaccctagaggccaacattgatttttgaagagtaggtaggt 64
           |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattctcaatacactcaagactctagaggccaacattgatttttgaagagtaggtaggt 457

                                                                       
Query: 65  aagcatattgaactggatccaaaattctgtggcacttttctctacaagtcatttgctaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aagcatattgaactggatccaaaattctgtggcacttttctctacaagtcatttgctaat 397

                                                                       
Query: 125 tcacagatggcacagaatcaaatgctaagaaaatggtcagagtgcagtgactaagatact 184
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tcacagatggcacagactcaaatgctaagaaaatggtcagagtgcagtgactaagatact 337

                                                                       
Query: 185 ttgagctaagcagagttcttggcattcttgtggaattggaattagaagccagaattcaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttgagctaagcagagttcttggcattcttgtggaattggaattagaagccagaattcaaa 277

                                                                       
Query: 245 accttctaaggaagaaagacccctgtaacaaacccatctttctaggtagggtctcagata 304
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 accttccaaggaagaaagacccctgtaacaaacccatctttctaggtagggtctcagata 217

                       
Query: 305 ggatacatctta 316
           ||||||||||||
Sbjct: 216 ggatacatctta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)