BAC Information

Click to search

BAC

Clone NameMSMg01-055L05
Chromosome1 (Build37)
Map Location 158,491,373 - 158,663,245
singlet/doubletdoublet
Overlap geneAbl2, Tor3a, C530043G21Rik
Upstream geneAcbd6, Lhx4, Qscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026
Downstream geneLOC433368, Ralgps2, Angptl1, 4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055L05.T7 (MSMg01no055_l05.b1)MSMg01-055L05.TJ (MSMg01no055_l05.g1)
ACCAG283299AG283300
length708722
length of high quality
(start - end)		304 (122 - 425)267 (73 - 339)
definitionCHROMAT_FILE: MSMg01no055_l05.b1 PHD_FILE: MSMg01no055_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:10 2005CHROMAT_FILE: MSMg01no055_l05.g1 PHD_FILE: MSMg01no055_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,491,373 - 158,491,678)(158,662,977 - 158,663,245)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGGATATCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACAAAAAC
AAAAACAAAAACAAAACACACAAAAAGAGTTCAGGGCCAACCTGGTCTTA
CCTGTTTTCACCAGTATTCTAATTATAAAAAATGAGGATGTGTTAAAATT
ACCATGAAGGTTTCAACCTGGGTAACTGGGATAATAACGATTTTATTGAC
AAAGTTGAAAGTTAAAAGCTGATGGATAGGATGTGAATATGGTAGCCCAA
GACTAGTGTAAAAAAAATTAATAAAAACTGGAAGAAATACAGTAAATCCT
TTTTAATTTGGGGGGGGGGCACGGGTGCTCCAGGGGATTAAACTTGAGGG
CCTCATCTAAGCTAGACTGGTGCTCTCCCACGAGCCCAGGCATCCAGCAC
AAGGAGGACTCTGGAATTTAGATAATATAGTCATTCAATTCATAGTCTAC
CACATTCTAACAGAATTGATCCACACAGGATAACCTGGCCTACCATATAG
CCGGTTGTAGGAAATGTGGAGATCTTTTTGTTTGTCCCCAAGGAGACAAA
CTACAGGACTAGCTTGGTGGTTCCCTGGCCCAGCGCTTGCCTACACTTGT
CATAAGCCTGCCCCGAAAACTTCTAATACTGCTTTTCAAGACAGATTCCT
GCCCTCCN

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTAGGAGCCCTTGGGAGTGAACTGTGC
TGTATTTGTGACAAGCTGTGTCTGTGTTACTTCTGCAGGCTCCTGTAGGA
GGACAATTCCATCTCTAGGCAGGTCTACCCATAACCTTTCTAAAATTAGC
AACAGTACACAAATGTAATGAACCTAAATGTCCAATGAGAGGTCACACGT
TAAATAAATTTCATCATATCCTCAGCATAAACTAGTAGAGACCTTCTAAA
ATGTGGTGGTAATGTAAAAAAAAACATTGTGACAAACTGGGTCTAGTAGT
TCACACCTGTAACCCCAGAATTTTAGAGGCTGTGACTAAAGGACCTGAGC
TTTCTGTGAAACTGTCTCACAACACACACACACACATATTCCCTCATACA
TAGAGATAGAGAGAGAGATCACAAGAGAATATATATGATTGATATGTTGT
CAAATTAAACAACAAAAGTCGATTTTTAGGGTAGGTAATAGCTCAGCGTT
AGAACACTTCTCCGCATTCTATCCCCATCTACTCCATAGTATAAATAACC
AGCAGATTTCTAATGAATCTCCTCAGGATTCCTGCGTTAATACATTCCAA
CATAAACCTGTATTGTCCTTGGCTCTTCCCCAAGTCCCCCCGCACATTAT
AAAACGATCCTTTTTGTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_l05.b1 MSMg01no055_l05.b1 CHROMAT_FILE:
MSMg01no055_l05.b1 PHD_FILE: MSMg01no055_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:10 2005
         (304 letters)



>mm_chr1_158491173_158491878
          Length = 706

 Score =  559 bits (289), Expect = e-164
 Identities = 302/307 (98%), Gaps = 4/307 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaagagttcagggccaacctggtcttacctgttttcaccagtattctaattataaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaagagttcagggccaacctggtcttacctgttttcaccagtattctaattataaaaa 260

                                                                       
Query: 61  atgaggatgtgttaaaattaccatgaaggttt-caacctgggtaactgggataataacga 119
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 atgaggatgtgttaaaattaccatgaaggttttcaacctgggtaactgggataataacga 320

                                                                       
Query: 120 ttttattgacaaagttgaaagttaaaagctgatggataggatgtgaatatggtagcccaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttattgacaaagttgaaagttaaaagctgatggataggatgtgaatatggtagcccaa 380

                                                                       
Query: 180 gactagtgtaaaaaaaattaataaaaactggaagaaatacagtaaatcctttttaatttg 239
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactagtgtaaaaaaa-ttaataaaaactggaagaaatacagtaaatcctttttaatttg 439

                                                                       
Query: 240 gggggggggc--acgggtgctccaggggattaaacttgagggcctcatctaagctagact 297
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 440 gggggggggcgcacgggtgctccaggggattaaacttgagggcctcatctaagctagacc 499

                  
Query: 298 ggtgctc 304
           |||||||
Sbjct: 500 ggtgctc 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 706
Length adjustment: 9
Effective length of query: 295
Effective length of database: 697
Effective search space:   205615
Effective search space used:   205615
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no055_l05.g1 MSMg01no055_l05.g1 CHROMAT_FILE:
MSMg01no055_l05.g1 PHD_FILE: MSMg01no055_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:10 2005
         (267 letters)



>mm_chr1_158662777_158663445
          Length = 669

 Score =  493 bits (255), Expect = e-144
 Identities = 265/269 (98%), Gaps = 2/269 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaggagcccttgggagtgaactgtgctgtatttgtgacaagctgtgtctgtgttactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tttaggagcccttgggagtgaactgtgctgtatttgtgacaagctgtgtctgtgttactt 410

                                                                       
Query: 61  ctgcaggctcctgtaggaggacaattccatctctaggcaggtctacccataacctttcta 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 409 ctgcaggctcctgtaggaggacaattccatctctaggcaagtctacccataacctttcta 350

                                                                       
Query: 121 aaattagcaacagtacacaaatgtaatgaacctaaatgtccaatgagaggtcacacgtta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 349 aaattagcaacagtacacaaatgtaatgaacctaaatgtccaatgagagggcacacgtta 290

                                                                       
Query: 181 aataaatttcatcatatcctcagcataaactagtagagaccttctaaaatgtggtggtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aataaatttcatcatatcctcagcataaactagtagagaccttctaaaatgtggtggtaa 230

                                        
Query: 241 tgt--aaaaaaaaacattgtgacaaactg 267
           |||  ||||||||||||||||||||||||
Sbjct: 229 tgtaaaaaaaaaaacattgtgacaaactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 669
Length adjustment: 9
Effective length of query: 258
Effective length of database: 660
Effective search space:   170280
Effective search space used:   170280
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |