BAC Information

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BAC

Clone NameMSMg01-055N05
Chromosome1 (Build37)
Map Location 156,764,916 - 156,917,217
singlet/doubletdoublet
Overlap geneLOC671336
Upstream geneLOC100043359, Cacna1e
Downstream geneIer5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367, Acbd6, Lhx4, Qscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055N05.T7 (MSMg01no055_n05.b1)MSMg01-055N05.TJ (MSMg01no055_n05.g1)
ACCAG283389AG283390
length702733
length of high quality
(start - end)
448 (43 - 490)158 (166 - 323)
definitionCHROMAT_FILE: MSMg01no055_n05.b1 PHD_FILE: MSMg01no055_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:20 2005CHROMAT_FILE: MSMg01no055_n05.g1 PHD_FILE: MSMg01no055_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,764,916 - 156,765,359)(156,917,060 - 156,917,217)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCATCTTATCCCCAATGATAGTCATCTGGCAAATGGATATGGTTTCAC
TCAACAACTCTACCTCCTGATCATCAAACTGTTCTCTTCCTTGAAGGGTC
CACACCTCATGGAGCAGAGGTCATCTCAACTGTGCACAGTTTAAAAAGAA
TAAAAGCTTTCCTATGTCACTTGGTGCTGAGTGGTTTATTACACAGCAAT
AATAAGTAGTATGTGTGAGGGATACAGAGACATGAAATTTAATTAAGGCC
GTATATGAGGTTTAAGTTTGCCTCTTAACAGTTGCAGAGCTAAATAACCA
CTTATGCACACCTCTGTTTTCACATCTCACTGTGAACGACATTGATAATA
GCAATGACAGCAAGAACATTGGCACTGTCTACTTCACAGTGCTGTTAAAT
TAGGTGGGAAAAGGACTTTTGAAATTGTACAACACTATAACTAATGTAAA
ACATTATTTCAGCTTCTGGCATGCTCTTGGGATATCTTTACTGAAACAAA
ACCTAAATCTTCCCATAACTACTGCCTATAACCGTCTCCAAAAACAAAGA
AACAAGCCTAACTCTTCTTTCCCCTCACAATAGCTTAAGAAACAGGAGAT
ACCCACTCCCCTGCCCGCTGAGTCCTCTGGGGCACACCCAGCTGCCCAAA
AG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTGCTGTGAAGAGAAATCAAAGACA
AAAGCATTAGAGCCTGTCTAAGCTTCCTTACACTAAGACAGGCGCTAGGT
CCAAGAATGAAACGAAGTCCAGGGTGACCCAGTTTTTGCTCTCAGGGAGT
TCACGCTATAACCAGGGAGGTGTCACATGCTCTTCTGCAAATGAATGTCA
TTTTTCTTTCTGGGAATGAGCTGCTCACAGCAACCGAGGTTGGGGCTTTG
CCTAAGGTGGAGGCAATGAGAACCGGTTTTGTCTTCCCAGAGGTATAAAC
TAGACTTACTTGGTGCCTCTGCTTGCCAGAATGAGCATGTTCAGATAGCC
TGACTCAGGTTGGGGAGTACCTCCTAGTTTTTGGACTCCTTTTGGGTCAA
GTGGTTGTTGTGAGCAGACCGAGGTGAGGCTTTCCCAGGGATGGTAGCTG
AGGAGGTGGATTTGCTAAACCTCCCAAGCGGGCGGTTGTCTGTCAGCTGC
TTCTGATCTTTTTTCCACCTTTCGTCCCGATTACACGGTTACATAAAATC
CTGCTTATTCACTTCATGGATTCCTCCCGTTTATTTCCCGTCTTATTATT
CCGGCTTTCCTTCTTTATATATCTATACGAAATTGCATCTATCACTACCC
TCCACGTGCTGCCCCCAACTTGTTTTTTTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_n05.b1 MSMg01no055_n05.b1 CHROMAT_FILE:
MSMg01no055_n05.b1 PHD_FILE: MSMg01no055_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:20 2005
         (448 letters)



>mm_chr1_156764712_156765559
          Length = 848

 Score =  828 bits (428), Expect = 0.0
 Identities = 440/444 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcatcttatccccaatgatagtcatctggcaaatggatatggtttcactcaaca 64
           |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcatctgatagccaatgatagtcatctggcaaatggatatggtttcactcaaca 264

                                                                       
Query: 65  actctacctcctgatcatcaaactgttctcttccttgaagggtccacacctcatggagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actctacctcctgatcatcaaactgttctcttccttgaagggtccacacctcatggagca 324

                                                                       
Query: 125 gaggtcatctcaactgtgcacagtttaaaaagaataaaagctttcctatgtcacttggtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaggtcatctcaactgtgcacagtttaaaaagaataaaagctttcctatgtcacttggtg 384

                                                                       
Query: 185 ctgagtggtttattacacagcaataataagtagtatgtgtgagggatacagagacatgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgagtggtttattacacagcaataataagtagtatgtgtgagggatacagagacatgaa 444

                                                                       
Query: 245 atttaattaaggccgtatatgaggtttaagtttgcctcttaacagttgcagagctaaata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttaattaaggccgtatatgaggtttaagtttgcctcttaacagttgcagagctaaata 504

                                                                       
Query: 305 accacttatgcacacctctgttttcacatctcactgtgaacgacattgataatagcaatg 364
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 accacttatggacacctctgttttcacatctcactgtgaacgacattgataatagcaatg 564

                                                                       
Query: 365 acagcaagaacattggcactgtctacttcacagtgctgttaaattaggtgggaaaaggac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acagcaagaacattggcactgtctacttcacagtgctgttaaattaggtgggaaaaggac 624

                                   
Query: 425 ttttgaaattgtacaacactataa 448
           ||||||||||||||||||||||||
Sbjct: 625 ttttgaaattgtacaacactataa 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no055_n05.g1 MSMg01no055_n05.g1 CHROMAT_FILE:
MSMg01no055_n05.g1 PHD_FILE: MSMg01no055_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:20 2005
         (158 letters)



>mm_chr1_156916860_156917417
          Length = 558

 Score =  298 bits (154), Expect = 1e-85
 Identities = 157/158 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtccagggtgacccagtttttgctctcagggagttcacgctataaccagggaggtgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 agtccagggtgacccagtttttgctctcagggagttcacgctataaccagggaggtgtca 299

                                                                       
Query: 61  catgctcttctgcaaatgaatgtcatttttctttctgggaatgagctgctcacagcaacc 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 298 catgctcttctgcaaatgaaggtcatttttctttctgggaatgagctgctcacagcaacc 239

                                                 
Query: 121 gaggttggggctttgcctaaggtggaggcaatgagaac 158
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gaggttggggctttgcctaaggtggaggcaatgagaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 558
Length adjustment: 8
Effective length of query: 150
Effective length of database: 550
Effective search space:    82500
Effective search space used:    82500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)