BAC Information

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BAC

Clone NameMSMg01-056B13
Chromosome1 (Build37)
Map Location 125,253,929 - 125,254,131
singlet/doubletsinglet
Overlap geneDpp10
Upstream geneLOC666983
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056B13.T7 (MSMg01no056_b13.b1)MSMg01-056B13.TJ (MSMg01no056_b13.g1)
ACCAG283590AG283591
length716707
length of high quality
(start - end)
236 (73 - 308)289 (72 - 360)
definitionCHROMAT_FILE: MSMg01no056_b13.b1 PHD_FILE: MSMg01no056_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:40 2005CHROMAT_FILE: MSMg01no056_b13.g1 PHD_FILE: MSMg01no056_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATGTGTTACCTTAAAGGGCACAATTGCTCTCATATAACAGCTT
TTATTGTTTGTTACAACAGCTTTCGCTCATTAAGAACATTTTCCTAAAAT
TTTAGTTCCATGTAACACCTGAGGGGGCAATAAAGAAACTGCTAAAATGG
CCATTCCATGATTGGGGGCAAGATTTTTATTGTGTGAGAGAGAGGGAAAG
AGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAG
AGACAGAGACAGAGACAGAGACTTATACAGAGACAGACAGAGACAGATAA
AGAGACACATATAGATGGAACTAGCGCCCATCCAACAGAGTCAGACAGTG
CTAAAGGTTTCACATGGGAGGTTTATCAAAAGGATTCAGCAGCTCCCTCT
TTTGGAGGGGAAGGAAAAAGGTGGCTCTTATATAGGGGCCCCAGTGTATG
TGGATCGAGGACATGCTGACAGGTGCCACCATAGGATTGTGTTGTCTCTC
AGTAGCTAATAAGTATTTGGTTGTCTATGGTCTGTCTGATCGCCCCATCA
TATACAGTCCGTCTGATGGTCCCTTTGACACCCAACCGGGCTGTTTGCAA
TGTTCCCTGCTCCGTTCCTACATATGTCTATCTTATTGTCGACTATGTAG
CCCACGCTTTTTCCCC
AATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACTTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAATACTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGTGCATATATCCAGAAGATGCCTCAACAGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCTAGATGCCCCTCAACAGAGGATTGGATACAGAAAATGCGT
TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT
GAAATTCCTAGCCCAATGGATGGACCTGGAGGGCATCATCCTGAGAGAGG
TAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATTAGTGGA
TTTTAGCCCCAAACCTAGGTATACCAAGATTTAAGAAATAATTTGCTAAA
CTCATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_b13.b1 MSMg01no056_b13.b1 CHROMAT_FILE:
MSMg01no056_b13.b1 PHD_FILE: MSMg01no056_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:40 2005
         (236 letters)



>mm_chr1_125253785_125254420
          Length = 636

 Score =  327 bits (169), Expect = 4e-94
 Identities = 196/205 (95%), Gaps = 2/205 (0%)
 Strand = Plus / Minus

                                                                       
Query: 29  ttattgtttgttacaacagctttcgctcattaagaacattttcctaaaattttagttcca 88
           ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 347 ttattgtttgttacaacagattttgctcattaagaacattttcctaaaattttagttcca 288

                                                                       
Query: 89  tgtaacacctgagggggcaataaagaaactgctaaaatggccattccatgattgggggca 148
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 287 tgtaacacctgagggggcaataaagaaactgctaaaatagccattccatgattgggggca 228

                                                                       
Query: 149 agatttttattgtgtgagagagagggaaagagggagagagagagagagagagagagagag 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 227 agatttttattgtgtgagagagagggaaagagggagagagagagagagagagacagagac 168

                                    
Query: 209 agagagagagagagagacagagaca 233
           ||| ||||| ||||| | |||||||
Sbjct: 167 agacagagacagaga-a-agagaca 145


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)