Query= MSMg01no056_f17.b1 MSMg01no056_f17.b1 CHROMAT_FILE:
MSMg01no056_f17.b1 PHD_FILE: MSMg01no056_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:59 2005
(482 letters)
>mm_chr1_12418212_12419093
Length = 882
Score = 895 bits (463), Expect = 0.0
Identities = 475/481 (98%), Gaps = 5/481 (1%)
Strand = Plus / Plus
Query: 5 gaattcttctgattcc---tgtctcacccagggctccaagccttcttgctggttttcttc 61
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcttctga--ccagatgtctcacccagggctccaagccttcttgctggttttcttc 261
Query: 62 tgttgctattatatgatgccatcattacagtaaaccaatttactgttcatcaaatgacca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgttgctattatatgatgccatcattacagtaaaccaatttactgttcatcaaatgacca 321
Query: 122 caaagtatagaactcttgttatataggtttgttttgcataaaagaaagtattgtaatagt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 caaagtatagaactcttgttatataggtttgttttgcataaaagaaagtattgtaatagt 381
Query: 182 cctatacccacaagactatggtggccaaacactaagattttcacatcattgagagtgtaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cctatacccacaagactatggtggccaaacactaagattttcacatcattgagagtgtaa 441
Query: 242 ttgttttgaagagaccaaggctttagaatgctctataattttgctgttgttgttgttgtt 301
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 442 ttgttttgaagagaccaaggctttagaatgctctagaattttgctgttgttgttgttgtt 501
Query: 302 accttttgtgtgtcctctatgaatacagcagcccttatgagtactataggaaaaaacagt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 accttttgtgtgtcctctatgaatacagcagcccttatgagtactataggaaaaaacagt 561
Query: 362 ttctgagatggagtcatgctgctgagccttccttgccatgatggtctaaccatgctgaaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttctgagatggagtcatgctgctgagccttccttgccatgatggtctaaccatgctgaaa 621
Query: 422 gcacaataagataaatcatggcttccttaagttattcatgtccactattttgtcacagca 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gcacaataagataaatcatggcttccttaagttattcatgtccactattttgtcacagca 681
Query: 482 a 482
|
Sbjct: 682 a 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_f17.g1 MSMg01no056_f17.g1 CHROMAT_FILE:
MSMg01no056_f17.g1 PHD_FILE: MSMg01no056_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:00 2005
(282 letters)
>mm_chr1_12562609_12563290
Length = 682
Score = 499 bits (258), Expect = e-146
Identities = 276/282 (97%)
Strand = Plus / Minus
Query: 1 caggatgagtgccgtgagaggaattcatggaatgctaggcaggtaatcccgggaaaggca 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 482 cagggtgagtgccgtgagaggaattcatggaatgctaggcaggtaatcccgggaaagaca 423
Query: 61 ctggaggctgttcaccttgctccactcctagacatggagctgaggtcatcaggaactttc 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ctggaggctgttcaccttgttccactcctagacatggagctgaggtcatcaggaactttc 363
Query: 121 ctttggtaaatttgagcctgagaacccatcctgtagatttgtatacagtgaacatgatgg 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ctttggtaaatttgagcccgagaacccatcctgtagatttgtatacagtgaacatgatgg 303
Query: 181 tctagagaaagctttcctgggactggtaatcctggtcttaactgaagattcttggtggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tctagagaaagctttcctgggactggtaatcctggtcttaactgaagattcttggtggga 243
Query: 241 agtattatgttctgtgaaacaaacagggagctgatttataag 282
||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 242 agtataaggttctgtgaaacaaacagggagctgatttataag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
