Query= MSMg01no056_h23.b1 MSMg01no056_h23.b1 CHROMAT_FILE:
MSMg01no056_h23.b1 PHD_FILE: MSMg01no056_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:11 2005
(289 letters)
>mm_chr1_14042881_14043569
Length = 689
Score = 505 bits (261), Expect = e-147
Identities = 282/289 (97%)
Strand = Plus / Plus
Query: 1 aggtcaaacaggaactaagcaggttgtaccttctcctatgacagccagctcccctcttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtcaaacaggaactaagcaggttgtaccttctcctatgacagccagctcccctcttac 260
Query: 61 tcaccaagctcctgatggctttctggttgctgccctgaactgctctgcgctgtcttccca 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 tcaccaagctcctgatggctttctggttgctgccctgcactgctctgcgctgtcttccca 320
Query: 121 ttgttgaaggtagttgttcatgtcatccgtagagcagaaatgagaactctgactttagaa 180
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ttgtggaaggcagttgttcatgtcatccgtagagcagaaatgaaaactctgactttagaa 380
Query: 181 ccaatgacttggcaatagttgaatgaatacaaatgtggccatagggttttaaggcaacta 240
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaatgatttggcaataattgaatgaatacaaatgtggccatagggttttaaggcaacta 440
Query: 241 atcaggctaacatccatagaaaagcctctaaaacagaaagaatagaaaa 289
|||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcagggtaacatccatagaaaagcctctaaaacagaaagaatagaaaa 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no056_h23.g1 MSMg01no056_h23.g1 CHROMAT_FILE:
MSMg01no056_h23.g1 PHD_FILE: MSMg01no056_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:11 2005
(514 letters)
>mm_chr1_14192952_14193864
Length = 913
Score = 764 bits (395), Expect = 0.0
Identities = 425/439 (96%), Gaps = 8/439 (1%)
Strand = Plus / Minus
Query: 83 gtaatataaaccctctcagtttaggagaggacaagttttatcagcaacagatgattgtta 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 gtaatataaaccctctcagtttaggagaggacaagttttatcagcaacagatgattgtta 854
Query: 143 acacaatgaattatattgaatttgttttatctgtattacaactagtggacaacaaagagc 202
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 853 acacaatgaattatattgaatttgttttatctgtattacaactaatggacaacaaagagc 794
Query: 203 ttttatgttatccattattcttattaaaatattattttattgtttttatgtattcataag 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ttttatgttatccattattcttattaaaatattattttattgtttttatgtattcataag 734
Query: 263 attgtccttattt-------atgtaaaatagacatataatgctttattcaaacgctttga 315
||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 733 attgtccttatttatctaaaatgtaaaatagacatataatgctttattcaaaagctttga 674
Query: 316 aaatttgatgtttatcaaaaagttagggtcaacatgaacagtggttaacataagagacat 375
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 673 aaatttgatgtttatcaaaaagttggggtcaacatgaacagtggttaacataagagacat 614
Query: 376 ttgttgggctaaagatacagagtgcttgcctaccatatgtgactccataggttctagctc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 613 ttgttgggctaaagatacagagtgcttgcctaccatatgtgactccataggttctagttc 554
Query: 436 tgtcactgcacagagagagtgagatagaacttaggagccctgtgggaggggttacccagg 495
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 553 tgtcactgcacagagagagtgagatagaacataggagccctgtgggagaggttacccagg 494
Query: 496 aagtgaactgggaagaagc 514
|||||||| ||||||||||
Sbjct: 493 aagtgaac-gggaagaagc 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 913
Length adjustment: 10
Effective length of query: 504
Effective length of database: 903
Effective search space: 455112
Effective search space used: 455112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
