Query= MSMg01no056_n05.b1 MSMg01no056_n05.b1 CHROMAT_FILE:
MSMg01no056_n05.b1 PHD_FILE: MSMg01no056_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:35 2005
(603 letters)
>mm_chr1_41076095_41077102
Length = 1008
Score = 812 bits (420), Expect = 0.0
Identities = 449/460 (97%), Gaps = 6/460 (1%)
Strand = Plus / Minus
Query: 149 aaacagtaaattcaatagagaaaaataatcaaggagataaaacaaacaaacaaaaaaaaa 208
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 1008 aaacagtaaattcaatagagaaaaataatcaatgagataaaacaaacaaac-aaaaaaaa 950
Query: 209 tccagttctttgaaaaaaaaatctctaaggtcaataatccctgaccaagctaagaataat 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 tccagttctttgaaaaaaaaatctctaaggtcaataatccctgaccaagctaagaataat 890
Query: 269 tatgaaaggacaaaaatgactaaaaacagaaatgaagatgggcctccctgcatggtcaag 328
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 889 tatgaaaggacagaaatgactaaaaacagaaatgaagatgggcctccctgcatggccaag 830
Query: 329 gcacatagagtgataagggaagaaaaattgatatatactccaaaaaatatcatggcaaaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 gcacatagagtgataagggaagaaaaattgatatatactccaaaaaatatcatggcaaaa 770
Query: 389 tatcagcacagttgtttaatcctgcataaaagtaatcagtaaataaaaaagtccaattgc 448
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 769 tatcagcacagttgtttaatcccgcataaaagtaatcagtaaataaaaaagtccaattgc 710
Query: 449 ttgagtttattatcccaagtattcatagccagttcaccattcagaaagatctagaacact 508
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gtgagtttattatcccaagtattcatagccagttcaccattcagaaagatctagaacact 650
Query: 509 gtgttatccttatgataaaaaa-caaaacaa--caaaaaaaaaaa--catgatttccccc 563
|||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||
Sbjct: 649 gtgttatccttatgataaaaaaacaaaacaaaacaaaaaaaaaaaaacatgatttccccc 590
Query: 564 ccccccatggtagttttaaaagcaggtgacaagaccctgc 603
||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ccccccatggtagttttaaaagcaggtgacaagaccctgc 550
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1008
Length adjustment: 10
Effective length of query: 593
Effective length of database: 998
Effective search space: 591814
Effective search space used: 591814
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_n05.g1 MSMg01no056_n05.g1 CHROMAT_FILE:
MSMg01no056_n05.g1 PHD_FILE: MSMg01no056_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:35 2005
(555 letters)
>mm_chr1_40914866_40915821
Length = 956
Score = 928 bits (480), Expect = 0.0
Identities = 537/556 (96%), Gaps = 1/556 (0%)
Strand = Plus / Plus
Query: 1 tcattgattgtctggagga-ttaaatgtgtggagacttctcagcaacggtcagtaaaatg 59
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tcattgattgtctggaggaattaaatgtgtggagacttctcagcaactgtcagtaaaatg 260
Query: 60 gagggggaaaattacagaaagaacttggaaagacactgtcttatatattcaaaatcaagg 119
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 tagggggaaaattacagaaagaacttgggaagacactgtcttatatattcaaaatcaagg 320
Query: 120 aggatagaggaagattttatgcctttcgtattattttttaattaattaattataaactcg 179
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 aggatagaggaagattttatgcctttcgtattatcttttaattaattaattataaactcg 380
Query: 180 agattttattcccttcctggcccaacctctgactgttccacaccccatacctcctccctg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agattttattcccttcctggcccaacctctgactgttccacaccccatacctcctccctg 440
Query: 240 ctcccctgtcttcacgaggatgcccccactccccaccttgctccaccagatctctaaact 299
|||||||||||||||||||||| | ||||||| |||| |||||||||||||||||||||
Sbjct: 441 ctcccctgtcttcacgaggatgtcaccactcctcaccctgctccaccagatctctaaaca 500
Query: 300 ccctgcggcctctagtctcttgagggttaggtgcaacttctctgactaaacccagacctg 359
||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 ccctggggcctccagtctcttgagggttaggtgcatcttctctgactaaacccagacctg 560
Query: 360 gtagtcctccgccatatatgtgttgaggggcctcatatcagctggcgtacctgcctggtt 419
| ||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||
Sbjct: 561 gcagtcctccgccatatatgtgttgaggggcctaatatcagctgacatacctgcctggtt 620
Query: 420 ggtggtctagtgcttgagagatctcaggggtccaagtttattgagactgctggtcctcct 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtggtctagtgcttgagagatctcaggggtccaagtttattgagactgctggtcctcct 680
Query: 480 acagggccgacctcctccttagcttcttccagctttcccctaattcaaccacaggggtca 539
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 acagggccgacctcctccttagcttcgtccagctttcccctaattcaaccacaggggtca 740
Query: 540 gcagcttctgtccatt 555
||||||||||||||||
Sbjct: 741 gcagcttctgtccatt 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 956
Length adjustment: 10
Effective length of query: 545
Effective length of database: 946
Effective search space: 515570
Effective search space used: 515570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
