BAC Information

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BAC

Clone NameMSMg01-056O14
Chromosome1 (Build37)
Map Location 112,268,070 - 112,268,262
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666508, Cdh7
Downstream geneLOC100041429, EG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056O14.T7 (MSMg01no056_o14.b1)MSMg01-056O14.TJ (MSMg01no056_o14.g1)
ACCAG284202AG284203
length697710
length of high quality
(start - end)
576 (56 - 631)146 (118 - 263)
definitionCHROMAT_FILE: MSMg01no056_o14.b1 PHD_FILE: MSMg01no056_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:41 2005CHROMAT_FILE: MSMg01no056_o14.g1 PHD_FILE: MSMg01no056_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTATACGACTCACTTCAAAAGAGGATCCGCGGAATTCTAGGTTTC
ACTACTTCTGCTCTGGTGCTAAAATAGGAGAATTGTCACAGTCCCCTGAT
GTTTTAAACAGCTACTGTGCAGTAACCTCAGGCTCTCATGCTTTGGAGAG
AAACACTTAATGGACTGACATAATTCCACAAGGTGGTGGGATGCTAAGCG
TGGGAGAGAAAGACATTCCCAGGGCACACCAATTGCTTATCTAATAAGAA
ATTGTCGACTCAGCAGAACTTAGGAAATTAGTCTGAACAGGTTACAGGGT
GCACCATATAACCAGACAGCTTCTGGGACGGGCAGAAGCACAGAGTCGCT
GAGGCAGCATCCTTGGCGGGCCTCAGACAGCCGGCCACCGTCCGGACCAG
AGGACAGGTGTCCGCCTGGCTTGGGAGGCGGCCTCAGCCATCTGGGTTCC
AGGACTCCGCGGGACCTAGGAAATTAGTCTGCACAGGTGAGAGTCTGCAC
CACAGAAGCTGACAGCTTCTGGGAACTGCCAAAGCAACACAGCTTCTGAG
AGAGGCCCTGTTTTGGGCCTTCTTCTTCGACCAGGAGGAGGTCCAAAAAC
AAGATATCTGCACACCTTCCCTGTAAGAGAGCTTGCCAGCAAAGAGTGCT
CTGAGCACTGAAACTCAGAGGAGAGAATTTGTCTCCCAGGTCTGCTG
TCATTGAAGTGGGAGGCCTGGAGGCCGCCTTTCAAAAACATTAGGTGAAC
TATAGATTACCCGAGGAATTCTTAAATATGGTGCTTTTTCATTGGTGGTT
AGCATGTATAAGACCGCAAATAGATCCATTCTTATCTCCTTGTAGGAAGT
TCAAGTTTAAGTGGATCAAGGAATTCCACGTAAAATCAGATACACTAAAA
CTAATAGAAAAGAAATTGGGGGAAAGACTTGAGCATATGGGTACACGGGA
AAGTTTCCAGAACAAAACACCAATACCTTAAATTCTAAGATCAAGAATTG
ACCAATGGGACCTTTTTTAATTGCAAAGCTTTTGTAAGACAAAGAACACT
GTTATTTTGACACCACAGCCACCAACAGATTCTGATGTATCTAACTAGTA
TTGGTTTCCGTTAATTATGAATTTGCGCTCGCCTCTTACTATCCTATTAT
CTTTGTTGCTAGGTGGTCTTACTGTCTTTGACTATAGCTTGACTCTTCTG
AAAGCCTTTGACCCTGTCATCTTATGTTTTGCATCAATTCTGAGATCATC
AGCATTCTCTGCTGTACCATAAACTGTGACATATTTTTAGCTCCTTGCGA
ACTAACTGAAAACAATAAGGCTTTCTCAATGCAATCCCAAATGTCTTTAT
TTTATTTTGTTCTTCCCCCCCCCCCATTTTTCCTTTACTTACATTCTCCG
CTTCCATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_o14.b1 MSMg01no056_o14.b1 CHROMAT_FILE:
MSMg01no056_o14.b1 PHD_FILE: MSMg01no056_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:41 2005
         (576 letters)



>mm_chr1_112267932_112268907
          Length = 976

 Score =  335 bits (173), Expect = 7e-96
 Identities = 188/193 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgctctggtgctaaaataggagaattgtcacagtcccctgatgttttaaacagctac 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttctgctctggtgctagaataggagaattgtcacagtcccctgatgttttaaacagctac 272

                                                                       
Query: 61  tgtgcagtaacctcaggctctcatgctttggagagaaacacttaatggactgacataatt 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgtgcagtgacctcaggctctcatgctttggagagaaacacttaatggactgacataatt 212

                                                                       
Query: 121 ccacaaggtggtgggatgctaagcgtgggagagaaagacattcccagggcacaccaattg 180
           ||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 211 ccacaaggtggagggatgctaagcttgggagagaaagtcattcccagggcacaccaattg 152

                        
Query: 181 cttatctaataag 193
           |||||||||||||
Sbjct: 151 cttatctaataag 139


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)