BAC Information

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BAC

Clone NameMSMg01-057D15
Chromosome1 (Build37)
Map Location 52,995,165 - 52,995,688
singlet/doubletsinglet
Overlap gene1700019D03Rik
Upstream geneEG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch
Downstream geneGdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b, Hecw2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057D15.T7 (MSMg01no057_d15.b1)MSMg01-057D15.TJ (MSMg01no057_d15.g1)
ACCAG284436AG284437
length1,562701
length of high quality
(start - end)
---525 (72 - 596)
definitionCHROMAT_FILE: MSMg01no057_d15.b1 PHD_FILE: MSMg01no057_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:06 2005CHROMAT_FILE: MSMg01no057_d15.g1 PHD_FILE: MSMg01no057_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTTTCTTNCCTCCTTTTTTCTCTCNNTCCTCTCNTTTTGTTAATTAC
CCCTCTCCGCGGCCGCGCCGCGCGCGTGTTNTGTNTTTCCTTCTCTGGTG
TTGTCGCTGCCTCTGGTTGTGTGCTTATATAATATTATTTGCGCGTGATA
TACATATATATTGACACGAGCCGCAGACAGAGGTCGGGCCCGAGCGCGAC
ATGCGTTGTGTCGTCCGTCGGTCGCTGTTGTTGTCTTTTGTCTCTCATCT
ACCCTCGCTTGTTGGAAGCTATGACATGCTAGGACACACAGTATTATATG
ACATATGACTTATCAATACAGAATGTAGTTGCCAGCACACTACTACTCTG
CATGTGTACGAGTATGTTACCGGAGCACGTTATTGCTCTATANACTTCTC
ACGTTATACGCNCCGTTGTAATGATAGGCGCATGTNGTATACGCCGGCGT
GCGCTATATTAGAGACGGCCTACGGAGTTCGGCTCATGCTATGTCGCCGA
GCCGCCGACAGCCCAACACTCGGTACTCGATGCGATGCAAGATATGATCT
ACATTACACTCTGCGCCGCGTACGCATATAAGCGTGTCTAATATTAGATA
CTGAGTGATCGCAGTCGTGGTGATCCAGCGTACAATGCGAAACACACCGA
CCAATAACAGGTAGATACGAGAGCGAATGCCACGGCATAGCTCGTTAAAT
ATATGCGACTACGATATTGAGCATCAGGAGATAGAGANCGAGAGAGCTGT
GGAGTGTATTCAAGCCTAGNCGGCGCGCGTGCAGTCGCCGCTCACGAGAT
AATGCGATGTGTTGTGTGACAGTCACGTATGTATGTTGCATGTCCACTTG
ATGACCAGTGATAACGTTAACGCGTGTGATACCCGGTATNATAGCGTCGT
TGAGCCATGTCGTCGACTGTGGTCTTATGAAAGGTGCTGAGTGTCAGCTA
TGTCTCGGCGNTATATACTCGCCTCACGTACATAGAGCAGTAGTTATGAG
GAGTAGCGCAAGCGGCGAAGATAGCGCTACAGGTGTGCGAGTAGNAGCAG
AGAATACGTGTCCCTGCTTCACGTGGCGATGCTACGCGTGNACGCAGTAT
CTAATAGGCCTGAGCTATATACATANTACAGACGCACGAGCGTCGACGTG
ATACGAACAGCTGAGGTTGTGTTCGAATNCTGCTTGTCGAACAAATATGT
GCATGGGGTTCGAGACGCGTGCAATGCTCGTGTTGAGACAATGGATAGAT
AGTAGACCCAGATAACGNCATCGCTAGAGCGATCAACAATCCACGCGCGG
ATAGACCGTGTGATATGATAAGACTGTGTAGGTGCGTGNCTGACACACGC
TGAGNATAGTGGTCGACAAATACATGGGCGGACGATGGCGCACGAGATAC
ACGCGTAAAGATACGTAGTAGTGCAGAGGCAGATGGTATGCTATAGAGTA
GGGGTCAGATACTCGANCGCGCAGTGAGAGAGCGTGTTACGGTCGTTTGA
GCTGACTAGNCGCGCCATCGAGCACGAGCTCGTTATCTGTATGCGCAGAT
CGCGTGCTGCGG
ATAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATTTTAAAAAGCACTTATAATAGGAAAA
TACTCAAAGAGAGCACGTGGATCCATACACTAGACTAACGCGGGAATGGA
AAATTAATGTATGGGTAGGGAATGCTAGACTCCAGGAGGAGAGCATCCTT
GAAATTCTTTTGCCTCATGAGTGACTTTTAAGCCTTTCGGCTTGTCCAGC
TGACTCGACCGGAGAGCGTAACAGTACCCAAGGCAGATTGAAGGCCTTAC
ACAAGAACAATTGGCCATATAATCTAATTCTTTACATCATCAAAATAGTA
ATGGCTTGAGACAATAATCTGATATTTTTAGAGAATGTGCATATCAAATT
GTAAAGTCTCGCTCTCAGTGTCCTCAGTTTCTACCTGTACCATGTAATGG
TGTTAATTTCTTAGGGCTTATACTTAATCAATTTTTGCAAGTAGAGAAGC
AACTAAAAATGTAGTTATCCACCATGGCAGTTATTCATCACTATGAAGAA
ATACATTGGATGCATATTCATATGTCCTTTGGGGCTTTGGGCTGAATGTG
AAGAAGGTGTGCTAATGAAGGCTAGTAGCCAGAGACTACTAGCAACTGTG
GTTCTTGAGCTCCTATCAACTTAAGACAGAGGAGTAAATAAACACAGACA
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_d15.g1 MSMg01no057_d15.g1 CHROMAT_FILE:
MSMg01no057_d15.g1 PHD_FILE: MSMg01no057_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:06 2005
         (525 letters)



>mm_chr1_52994964_52995888
          Length = 925

 Score =  953 bits (493), Expect = 0.0
 Identities = 517/525 (98%), Gaps = 1/525 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattttaaaaagcacttataataggaaaatactcaaagagagcacgtggatccatacact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aattttaaaaagcacttataataggaaaatactcaaagagagcacgtggatccatacact 261

                                                                       
Query: 61  agactaacgcgggaatggaaaattaatgtatgggtagggaatgctagactccaggaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agactaacgcgggaatggaaaattaatgtatgggtagggaatgctagactccaggaggag 321

                                                                       
Query: 121 agcatccttgaaattcttttgcctcatgagtgacttttaagcctttcggcttgtccagct 180
           ||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agtttccttgaaactcttttgcctcatgagtgacttttaagcctttcggcttgtccagct 381

                                                                       
Query: 181 gactcgaccggagagcgtaacagtacccaaggcagattgaaggccttacacaagaacaat 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gactcgaccagagagcgtaacagtacccaaggcagattgaaggccttacacaagaacaat 441

                                                                       
Query: 241 tggccatataatctaattctttacatcatcaaaatagtaatggcttgagacaataatctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tggccatataatctaattctttacatcatcaaaatagtaatggcttgagacaataatctg 501

                                                                       
Query: 301 atatttttagagaatgtgcatatcaaattgtaaagtctcgctctcagtgtcctcagtttc 360
           ||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 502 atatttttagagaatgtgcatatcaaattgtaaagacttgttctcagtgtcctcagtttc 561

                                                                       
Query: 361 tacctgtaccatgtaatggtgttaatttcttagggcttatacttaatcaatttttgcaag 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tacctgtaccatg-aatggtgttaatttcttagggcttatacttaatcaatttttgcaag 620

                                                                       
Query: 421 tagagaagcaactaaaaatgtagttatccaccatggcagttattcatcactatgaagaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagagaagcaactaaaaatgtagttatccaccatggcagttattcatcactatgaagaaa 680

                                                        
Query: 481 tacattggatgcatattcatatgtcctttggggctttgggctgaa 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tacattggatgcatattcatatgtcctttggggctttgggctgaa 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)