Query= MSMg01no057_d20.b1 MSMg01no057_d20.b1 CHROMAT_FILE:
MSMg01no057_d20.b1 PHD_FILE: MSMg01no057_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:07 2005
(346 letters)
>mm_chr1_148427038_148427784
Length = 747
Score = 640 bits (331), Expect = 0.0
Identities = 343/347 (98%), Gaps = 1/347 (0%)
Strand = Plus / Plus
Query: 1 ttcactatgttcaatctatcttgtagagcatttgcatcccactcttcatataaatcacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcactatgttcaatctatcttgtagagcatttgcatcccactcttcatataaatcacct 260
Query: 61 aaggaagcctggttcctaaaaaaaaaaa-tcatttctatatgttacagtatccgataaaa 119
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 261 aaggaagcctggttcctaaaaaaaaaaaatcatttctatatgttacagtatctgataaaa 320
Query: 120 ctacataattttcaaaatgtcaatttgatttcttcaacttttaataaaatcattttagta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctacataattttcaaaatgtcaatttgatttcttcaacttttaataaaatcattttagta 380
Query: 180 tatatgtggtagctcatgcctgtaactgaccacaagaaactgaggcaggaagcttaggtt 239
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tatatgtggtagctcatgcctgtaactgagcacaagaaactgaggcaggaagcttaggtt 440
Query: 240 gagttttaggccacctggaactaaatactgagtttgaggccatcccagagccccaagcaa 299
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 gagttttaggccacctggaactaaatactgaatttgaggccatcccagagccccaagcaa 500
Query: 300 gtgatgatcaactgattgacagttgatccccgtatgtcatagtgcag 346
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgatgatcaactgattgacagttgatccccgtatgtcatagtgcag 547
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 747
Length adjustment: 9
Effective length of query: 337
Effective length of database: 738
Effective search space: 248706
Effective search space used: 248706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_d20.g1 MSMg01no057_d20.g1 CHROMAT_FILE:
MSMg01no057_d20.g1 PHD_FILE: MSMg01no057_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:07 2005
(409 letters)
>mm_chr1_148614036_148614844
Length = 809
Score = 636 bits (329), Expect = 0.0
Identities = 398/437 (91%), Gaps = 30/437 (6%)
Strand = Plus / Minus
Query: 1 tcaccttagatttggcatatgaggttactggaacaagaaaattctcctgatgttagagtt 60
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 545 tcaccttagatttggcatatgaggttactggaacaagaaagttatcctgatgttagagtt 486
Query: 61 tcatagaaaacatcttacaaagccgggcatctcagaagaggacagacttaaagggagatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tcatagaaaacatcttacaaagccgggcatctcagaagaggacagacttaaagggagatc 426
Query: 121 cttattttcagacagaaactctcagcaaatgctgccagtgttatttcaggaatggtcctg 180
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctcattttcaaacagaaactctcagcaaatgctgccagtgttatttcaggaatggtcctg 366
Query: 181 attgagtttgtgctgtcagttctgttaatgtcttcggagtggatgtctttactatggttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 attgagtttgtgctgtcagttctgttaatgtcttcggagtggatgtctttactatggttt 306
Query: 241 ctcacttagtatccagtgtttctggatgggagatttgcttgttggttcttgtcttggtat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctcacttagtatccagtgtttctggatgggagatttgcttgttggttcttgtcttggtat 246
Query: 301 cctaggtttgaggacaggatgccattttctttttcttttcttttc----cg-----c--- 348
||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct: 245 cctaggtttgaggacaggatgtcattttctttttcttttcttttcttttcttttttcttt 186
Query: 349 ---ct-ctt------------aaatttcctttttaatttttctgtatagccttggctgtc 392
|| ||| | ||| ||||||||||||| ||||||||| ||||||||
Sbjct: 185 tttcttctttttttttttttga--ttttctttttaatttttttgtatagccctggctgtc 128
Query: 393 ctggaaatcactctgta 409
|||||||||||||||||
Sbjct: 127 ctggaaatcactctgta 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
