Query= MSMg01no057_j04.b1 MSMg01no057_j04.b1 CHROMAT_FILE:
MSMg01no057_j04.b1 PHD_FILE: MSMg01no057_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:34 2005
(625 letters)
>mm_chr1_149113741_149114765
Length = 1025
Score = 712 bits (368), Expect = 0.0
Identities = 399/422 (94%), Gaps = 20/422 (4%)
Strand = Plus / Plus
Query: 6 gaattctatatatgaacactcgtcctatatatatctatcagaatttaaaattttttaatc 65
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctatatatgaacactggtcctatatatatctatcagaatttaaaattttttaatc 265
Query: 66 acagtgatttatttttgtggttgtaagtgtataacttgctggagtcagtcctcttctatt 125
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 266 acagtgatttatttttgtggttgtaagtgtataacttgctggagtcagttctcttctatt 325
Query: 126 gcaatgtgagttttgaggaaggaagtcagttattgcttttcccactcaattatcttgctg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gcaatgtgagttttgaggaaggaagtcagttattgcttttcccactcaattatcttgctg 385
Query: 186 gcctcaacttcatttgttttaataatttttcctctttttgagtagaaatgatcaatacaa 245
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 386 gcctcaacttcatttgttttaatcatttttcctctttttgagtagaaatgatcaatacaa 445
Query: 246 tgcttgcttcatgctcagtgtgcatactactactaacctacccacccagctcctattcac 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgcttgcttcatgctcagtgtgcatactactactaacctacccacccagctcctattcac 505
Query: 306 tggcattattatgattaaaagactagttaaagcacaatcaatcaatcaatcaatcaatca 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tggcattattatgattaaaagactagttaaagcacaatcaatcaatcaatcaat------ 559
Query: 366 atatttatttatttatttatttatttatttatttatttatttatttatattacaaaaggg 425
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 --------------atttatttatttatttatttatttatttatttatattacaaaaggg 605
Query: 426 gt 427
||
Sbjct: 606 gt 607
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_j04.g1 MSMg01no057_j04.g1 CHROMAT_FILE:
MSMg01no057_j04.g1 PHD_FILE: MSMg01no057_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:34 2005
(552 letters)
>mm_chr1_149205161_149206112
Length = 952
Score = 746 bits (386), Expect = 0.0
Identities = 475/552 (86%), Gaps = 74/552 (13%)
Strand = Plus / Minus
Query: 1 tttaaatatattatgactttcagtttagtatttttatgggactccagaatatgtgaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tttaaatatattatgactttcagtttagtatttttatgggactccagaatatgtgaatta 615
Query: 61 gtggatctctgatgtttgtgccttcccacgtgctcttttccttcagttggtttgccttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gtggatctctgatgtttgtgccttcccacgtgctcttttccttcagttggtttgccttgt 555
Query: 121 acaaacaccaattaatgtcttcttttttatatactatttttaaattatgttttattgtta 180
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 554 acaaacacaaattaatgtcttctcttttatatactatttttaaattatgttttattgtta 495
Query: 181 aaaataaaattgaaacaaaaattttaagtaaaagagtattaattaaaaattgggcacaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aaaataaaattgaaacaaaaattttaagtaaaagagtattaattaaaaattgggcacaca 435
Query: 241 attttgtcttatacaccatcttaaatttgaaataatatttattaagtgcaataaattata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 attttgtcttatacaccatcttaaatttgaaataatatttattaagtgcaataaattata 375
Query: 301 tatatatgtatatatatacatatatatatatatacatatatacacacacacacatatata 360
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tatatatgtatatatatacatatatatatatatacatatata------------------ 333
Query: 361 tatatacatacacacacacacacacacatatatatatatatatacatatatatatatata 420
|||||| ||||||||||||||||||||
Sbjct: 332 --tataca----------cacacacacatatatatata---------------------- 307
Query: 421 tatatatatatatatacatataatacagtattaaagaacaccaaaaatatctatttaaaa 480
||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ----------------------atacagtattaaagaacaccaaaaatatctatttaaaa 269
Query: 481 aactgaggttctatggggatgttaaattttcattgaatgaaaagctaataaattttactt 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 268 aactgaggttctatggggatgttaaattttcattgaatgaaaagctaatgaattttactt 209
Query: 541 gaaaattatcta 552
||||||||||||
Sbjct: 208 gaaaattatcta 197
Score = 66.5 bits (34), Expect = 5e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 297 tatatatatatgtatatatatacatatatatata 330
||||||||||||||||||||||||||||||||||
Sbjct: 345 tatatatatatgtatatatatacatatatatata 378
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 106
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
