BAC Information

Click to search

BAC

Clone NameMSMg01-057L21
Chromosome1 (Build37)
Map Location 188,081,764 - 188,249,829
singlet/doubletdoublet
Overlap genenone
Upstream geneIars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik, LOC677785, Lyplal1
Downstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057L21.T7 (MSMg01no057_l21.b1)MSMg01-057L21.TJ (MSMg01no057_l21.g1)
ACCAG284825AG284826
length723719
length of high quality
(start - end)
332 (66 - 397)291 (67 - 357)
definitionCHROMAT_FILE: MSMg01no057_l21.b1 PHD_FILE: MSMg01no057_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:47 2005CHROMAT_FILE: MSMg01no057_l21.g1 PHD_FILE: MSMg01no057_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(188,249,498 - 188,249,829)(188,081,764 - 188,082,054)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGGAATTCTTT
GTAATTCTCATCTTGAGAGGGACAGAGGTAGGTAAAGATACTGATTAATT
TGTCTGTGATAAATGCCAACCAATCAATGGCCGCATTTAAACTGTTTCGT
CTCCAGGAAAATACGAGAATCGTAGAAATGAAGAGGAAAAGGCAGGAGTG
AAGTGTGAGAAGCAGAGACCGGAGAGGCACAAAGGGAAAGGGGAAAATAA
AAGCCAGTCACAGTGATGACATCACCTCTGTTTTAAAACTGAGCTGTGCA
TCTGTAGGAGTCATTTCTGCTCTGTCTCAGGAGGGGAAACGTGCTGAGCT
CCTGGGGCTGCTGCCTAACAGGTCTACCAGATGGACCCTGGTTCTGGCAG
CTGGGCTGACGCACTCCACTCAGGGTTTAAGATTCAGCAATGTATTATTA
AACCTGTGTGTAACACAATGTGCAAGATGACATCATGTCCCCGGGTGTGT
GTGACCTCACCAAAAATATGTGCCCTGCTGTGGAAGAAGAATAGAATTCC
AAGATAGCAAAAGCCAGGCAGAAATTTGAGCAACTTACGACTGCGTACTT
TCTTCTATCCAGCCTCCAGCACTGTTAGCCTTCCTACAAACAAACATAAA
GCCATTATTGTGTGCTATTTCACATCAAAAAACGTAATGTTAAATAGTTC
AGAGCTAAGTATCTATTGTGATG
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTAGTTCTGCTGCTCTGGAAGCCTCCAGTGTAAT
AGGAACAGGATGACCCACTGATTACATATTTGAGAATGAAATGAGATGGA
TTTTTATGATTCAGTACTCTGGGGTAGCCATGGATTGTGGACGGTAAAGA
ACAATTAAAGATGGTGTTTGTGGTTCATTAAGTAGAATATCCCTCGGTCC
TGATTTCAGGGGTAAAGGACTATCATCTGCCAATTCTAACAAAAGCGAGG
GATTTGTCAGGTCATACTTTAAGGAAGAAAACCACATGAGCTTTCAATAG
CCTATGGTCTATAAGTAGGCCTAACAGGATAATCAGTTTAATGACGATGG
GAACTGTCACCCACTCCCTAGGTGACTTGTCTTTTTATTTCGAAATTTAC
AATTGTTATCAAGATCAGTTGGCTTTTGCTTACCAACTTATTCTATTGCT
ATTTTTAGATCCTCAAAGTTTATTCTATAAATTCACTCCCTACAGAGAAC
CAAGGTACTCAGCTATTAACCATCTAGGAGAAAATCACGAACTTCCTCTG
AGTCCTTGTGGCTTCCCGCTGAATGGGCTTTCTGGTCAACCTACCTAGTT
GATTTTTCTCCTGTGTTCATTCAAATCTGACTAACTAATACCTCCTTGTA
TCCTTACAGGCAATAATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_l21.b1 MSMg01no057_l21.b1 CHROMAT_FILE:
MSMg01no057_l21.b1 PHD_FILE: MSMg01no057_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:47 2005
         (332 letters)



>mm_chr1_188249298_188250029
          Length = 732

 Score =  611 bits (316), Expect = e-179
 Identities = 328/332 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagggacagaggtaggtaaagatactgattaatttgtctgtgataaatgccaaccaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 agagggacagaggtaggtaaagatactgattaatttgtctgtgataaatgccaaccaatc 473

                                                                       
Query: 61  aatggccgcatttaaactgtttcgtctccaggaaaatacgagaatcgtagaaatgaagag 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 472 aatggccgcatttaaactgtttcgtctcccggaaaatacgagaatcgtagaaatgaagag 413

                                                                       
Query: 121 gaaaaggcaggagtgaagtgtgagaagcagagaccggagaggcacaaagggaaaggggaa 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gaaaaggcaggagcgaagtgtgagaagcagagaccggagaggcacaaagggaaaggggaa 353

                                                                       
Query: 181 aataaaagccagtcacagtgatgacatcacctctgttttaaaactgagctgtgcatctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aataaaagccagtcacagtgatgacatcacctctgttttaaaactgagctgtgcatctgt 293

                                                                       
Query: 241 aggagtcatttctgctctgtctcaggaggggaaacgtgctgagctcctggggctgctgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aggagtcatttctgctctgtctcaggaggggaaacgtgctgagctcctggggctgctgcc 233

                                           
Query: 301 taacaggtctaccagatggaccctggttctgg 332
           | |||||||||||||||||||||||| |||||
Sbjct: 232 tgacaggtctaccagatggaccctggctctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no057_l21.g1 MSMg01no057_l21.g1 CHROMAT_FILE:
MSMg01no057_l21.g1 PHD_FILE: MSMg01no057_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:47 2005
         (291 letters)



>mm_chr1_188081564_188082254
          Length = 691

 Score =  485 bits (251), Expect = e-141
 Identities = 281/291 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagttctgctgctctggaagcctccagtgtaataggaacaggatgacccactgattaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||
Sbjct: 201 ttagttctgctgctctggaagcctccagtgtaataggaacaggatgacatagtgattaca 260

                                                                       
Query: 61  tatttgagaatgaaatgagatggatttttatgattcagtactctggggtagccatggatt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 tatttgagaatgaaatgagatggatttttatgattcagtactctggggtagccaaggatt 320

                                                                       
Query: 121 gtggacggtaaagaacaattaaagatggtgtttgtggttcattaagtagaatatccctcg 180
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 321 gtggacggtaaagaacaattaaagacagtgtttgtggttcattaagtagaatatccctcg 380

                                                                       
Query: 181 gtcctgatttcaggggtaaaggactatcatctgccaattctaacaaaagcgagggatttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcctgatttcaggggtaaaggactatcatctgccaattctaacaaaagcgagggatttg 440

                                                              
Query: 241 tcaggtcatactttaaggaagaaaaccacatgagctttcaatagcctatgg 291
           |||||||||||   ||||||||||| |||||||||||||||||||||||||
Sbjct: 441 tcaggtcatacgagaaggaagaaaaacacatgagctttcaatagcctatgg 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)