BAC Information

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BAC

Clone NameMSMg01-057N02
Chromosome1 (Build37)
Map Location 133,371,424 - 133,371,735
singlet/doubletsinglet
Overlap geneSrgap2
Upstream geneZp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, LOC100042826, LOC100042821
Downstream gene2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057N02.T7 (MSMg01no057_n02.b1)MSMg01-057N02.TJ (MSMg01no057_n02.g1)
ACCAG284881AG284882
length707718
length of high quality
(start - end)
461 (42 - 502)205 (75 - 279)
definitionCHROMAT_FILE: MSMg01no057_n02.b1 PHD_FILE: MSMg01no057_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:53 2005CHROMAT_FILE: MSMg01no057_n02.g1 PHD_FILE: MSMg01no057_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAAT
TCAGCTCCTCATTCTCTGTGCATGTCTACCTGTGCTTTCGCATACAGATT
CTTCCTCTTCTCCCTCTGCAACCATGCTTTCTCTTACTCTTCACCTTGTG
CTCTGCTGCATAACACTGGACTCCTGTTGCTTCCCTTAATCTGCCAAGCA
TGCTTAGCAGAGTCCTGCCTTGAGACTCTGAAGCTTCTTCTTCCTAGCAC
ACTAGCATTTTCATAGTTCATTTCTCTGCTGTCTTGAATCTCTACTTGAA
AGTTACCTTATTAAATAGCCTTTGTGACAGTTCTCTAGAAAATGTACCCT
GACTTGCAAGGACCTCTGGAAGAGTAGTCAGTGCTCTTAACAGCTGAGTC
ATCTCTCCAGCCCTGACCTGTTGTTTTCTGTTTGATTAATTTCAAATCAC
TTTCCCCCACTCCCCACTGTCCTCTAATGTTCCTGTGGGAAAAGGATTTT
GTCTGATTTGCTCTGCTCTGTCTTTAATGCTTACAAAGTACTTGGCAGGT
ATTTGTTGACTGAATACATCAGCCTATTACTGATTCAGTATCCTCTGTAT
AAGGAGTCTCTTGGACCAGTGTTGCAGTATAGGGTTTGGAAAAGGTATGG
ACAATACAGCTCTGGTTTGTTTACAAAAGGTATTTTCTCAATGTACAAGG
GATTTAT
CAATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCTGGCATGGAACTTAGAAATCCA
CCTGCCTCTGCCTCCCAAGTGTTGGGTTTAAAGGCATGCACCACCACTGC
CTGGCCTTTTCTGGCTCCTGAGTCTTTTTTTTTAATTATTACTATTTTAT
TTTATGTATATGAGTATATTGTAGCTGTCTTCAGACACACCAGAAGAGGG
CATCGGACCCCATTACAGATGGTTGTGAGCCATCATGTGCTTGCTGGGAT
TTGAACTCAGGACCTCTGGAAGAGCAGTCTTTGCTCTTAACCACTGAGTC
ATCTCTCCCGTTCAATTACCACCATTTTCTTGACTACAAAACTGACTCTC
TCTTACACGTTCCGACTACGAGGACTTTCTACGATCTCCGCTCTGTATCG
TCTGACTAGGACATATCACACTGCTATCTCCATCAGCTCCCTTTTAGACT
TCGCCTCCTCCGCCTTATCCTTAGCGTTCGATACATGCTTCTACTACTTC
TCTCTCGGCACGTCTCGTATCTATCTCTTCCTCATCACATCACTTCCCGC
TTCTGCACAGTCATCGCTCTTCATCTCCTGTCTCCTCTTCCTATCTCTTC
ATCTACTCTGTCTCCTCCGCTCCTCCGACACCGACATGTCTCTCCCTCTT
CCTCGTCCTCCTTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_n02.b1 MSMg01no057_n02.b1 CHROMAT_FILE:
MSMg01no057_n02.b1 PHD_FILE: MSMg01no057_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:53 2005
         (461 letters)



>mm_chr1_133371220_133372081
          Length = 862

 Score =  572 bits (296), Expect = e-167
 Identities = 308/312 (98%), Gaps = 1/312 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcagctcctcattctctgtgcatgtctacctgtgctttcgcatac-agattcttc 63
           ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 516 ggaattcagctcctcattctctgtgcatgtctacctgtgcttttgcatacaagattcttc 457

                                                                       
Query: 64  ctcttctccctctgcaaccatgctttctcttactcttcaccttgtgctctgctgcataac 123
           ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ctcttcttcctccgcaaccatgctttctcttactcttcaccttgtgctctgctgcataac 397

                                                                       
Query: 124 actggactcctgttgcttcccttaatctgccaagcatgcttagcagagtcctgccttgag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 actggactcctgttgcttcccttaatctgccaagcatgcttagcagagtcctgccttgag 337

                                                                       
Query: 184 actctgaagcttcttcttcctagcacactagcattttcatagttcatttctctgctgtct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 actctgaagcttcttcttcctagcacactagcattttcatagttcatttctctgctgtct 277

                                                                       
Query: 244 tgaatctctacttgaaagttaccttattaaatagcctttgtgacagttctctagaaaatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgaatctctacttgaaagttaccttattaaatagcctttgtgacagttctctagaaaatg 217

                       
Query: 304 taccctgacttg 315
           ||||||||||||
Sbjct: 216 taccctgacttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 862
Length adjustment: 10
Effective length of query: 451
Effective length of database: 852
Effective search space:   384252
Effective search space used:   384252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)