MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-057N10
Chromosome	1 (Build37)
Map Location	122,684,058 - 122,684,199
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco, En1
Downstream gene	AI848258, Insig2, Ccdc93, LOC100041926, Htr5b, LOC666656, Ddx18
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ptpn4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19258 MGI:1099792
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042447 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042447
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 125 ESTs, 2 Proteins pseudo : _no_value

name	LOC666870 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666870
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	LOC100041863 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041863
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Tmem177 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66343 MGI:1913593
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm101 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226356 MGI:2684947
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 1 Protein pseudo : _no_value

name	Sctr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319229 MGI:2441720
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem37 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170706 MGI:2157899
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dbi (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13167 MGI:94865
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	3110009E18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73103 MGI:1920353
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Steap3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68428 MGI:1915678
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C1ql2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226359 MGI:3032521
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Marco (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17167 MGI:1309998
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	En1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13798 MGI:95389
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AI848258 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98452 MGI:2138347
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs

name	Insig2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72999 MGI:1920249
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Ccdc93 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70829 MGI:1918079
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	LOC100041926 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041926
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins

name	Htr5b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15564 MGI:96284
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666656 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666656
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	Ddx18 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66942 MGI:1914192
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ptpn4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117320547 GeneID:19258 MGI:1099792
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein tyrosine phosphatase, non-receptor type 4 transcript_id : NM_019933.2

name	Tmem177 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62990170 GeneID:66343 MGI:1913593
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 177 transcript_id : NM_175106.3

name	Sctr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:60685208 GeneID:319229 MGI:2441720
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : secretin receptor transcript_id : NM_001012322.1

name	Tmem37 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31980888 GeneID:170706 MGI:2157899
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 37 transcript_id : NM_019432.2

name	Dbi (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83921597 GeneID:13167 MGI:94865
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : diazepam binding inhibitor transcript_id : NM_007830.3

name	Dbi (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83921594 GeneID:13167 MGI:94865
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : diazepam binding inhibitor transcript_id : NM_001037999.1

name	3110009E18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39930446 GeneID:73103 MGI:1920353
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 3110009E18 gene transcript_id : NM_028439.1

name	Steap3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803084 GeneID:68428 MGI:1915678
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : STEAP family member 3 transcript_id : NM_133186.2

name	C1ql2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46402220 GeneID:226359 MGI:3032521
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : complement component 1, q subcomponent-like 2 transcript_id : NM_207233.1

name	Marco (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130131 GeneID:17167 MGI:1309998
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : macrophage receptor with collagenous structure transcript_id : NM_010766.2

name	En1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7106304 GeneID:13798 MGI:95389
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : engrailed 1 transcript_id : NM_010133.1

name	AI848258 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363928 GeneID:98452 MGI:2138347
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs product : expressed sequence AI848258 transcript_id : XM_895892.2

name	Insig2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19526953 GeneID:72999 MGI:1920249
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : insulin induced gene 2 transcript_id : NM_133748.1

name	Insig2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31342571 GeneID:72999 MGI:1920249
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : insulin induced gene 2 transcript_id : NM_178082.2

name	Ccdc93 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68448541 GeneID:70829 MGI:1918079
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 93 transcript_id : NM_001025156.1

name	Ccdc93 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352460 GeneID:70829 MGI:1918079
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 93 transcript_id : NM_027567.2

name	Ccdc93 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371535 GeneID:70829 MGI:1918079
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 93 transcript_id : NM_029955.2

name	LOC100041926 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149234241 GeneID:100041926
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins product : similar to low molecular mass ubiquinone-binding protein transcript_id : XM_001477223.1

name	Htr5b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:24475921 GeneID:15564 MGI:96284
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 5-hydroxytryptamine (serotonin) receptor 5B transcript_id : NM_010483.2

name	Ddx18 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981162 GeneID:66942 MGI:1914192
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 transcript_id : NM_025860.2

name	Ptpn4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117320548 CCDS:CCDS15227.1 GeneID:19258 MGI:1099792
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008092 - cytoskeletal protein binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004726 - non-membrane spanning protein tyrosine phosphatase activity [Evidence IDA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : testis-enriched protein tyrosine phosphatase product : protein tyrosine phosphatase, non-receptor type 4 protein_id : NP_064317.2

name	Tmem177 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424705 CCDS:CCDS15228.1 GeneID:66343 MGI:1913593
definition	codon_start : 1 product : hypothetical protein LOC66343 protein_id : NP_780315.1

name	Sctr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:60685209 GeneID:319229 MGI:2441720
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy product : secretin receptor protein_id : NP_001012322.1

name	Tmem37 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9506457 CCDS:CCDS15229.1 GeneID:170706 MGI:2157899
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005923 - tight junction [Evidence IEA] GO_function : GO:0005262 - calcium channel activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA] GO_process : GO:0006816 - calcium ion transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : voltage-dependent calcium channel gamma subunit-like protein product : protein distantly related to to the gamma subunit family protein_id : NP_062305.1

name	Dbi (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6681137 CCDS:CCDS15230.1 GeneID:13167 MGI:94865
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0000062 - acyl-CoA binding [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; acyl-CoA binding protein; diazepam-binding inhibitor; diazepam binding inhibitor, splice form 1b product : diazepam binding inhibitor isoform 2 protein_id : NP_031856.1

name	Dbi (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83921595 CCDS:CCDS15231.1 GeneID:13167 MGI:94865
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0000062 - acyl-CoA binding [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; acyl-CoA binding protein; diazepam-binding inhibitor; diazepam binding inhibitor, splice form 1b product : diazepam binding inhibitor isoform 1 protein_id : NP_001033088.1

name	3110009E18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39930447 CCDS:CCDS15232.1 GeneID:73103 MGI:1920353
definition	codon_start : 1 product : hypothetical protein LOC73103 protein_id : NP_082715.1

name	Steap3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18875326 GeneID:68428 MGI:1915678
definition	GO_component : GO:0005768 - endosome [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0005771 - multivesicular body [Evidence ISS]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0050660 - FAD binding [Evidence IEA]; GO:0000293 - ferric-chelate reductase activity [Evidence IMP] [Evidence IDA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0006826 - iron ion transport [Evidence IMP]; GO:0009306 - protein secretion [Evidence ISS] codon_start : 1 exception : unclassified translation discrepancy note : dudlin 2 product : dudulin 2 protein_id : NP_573449.1

name	C1ql2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46402221 CCDS:CCDS15233.1 GeneID:226359 MGI:3032521
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 product : complement component 1, q subcomponent-like 2 protein_id : NP_997116.1

name	Marco (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754640 CCDS:CCDS15234.1 GeneID:17167 MGI:1309998
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0005044 - scavenger receptor activity [Evidence IEA] GO_process : GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 product : macrophage receptor with collagenous structure protein_id : NP_034896.1

name	En1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7106305 CCDS:CCDS15235.1 GeneID:13798 MGI:95389
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0008076 - voltage-gated potassium channel complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0005249 - voltage-gated potassium channel activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0030326 - embryonic limb morphogenesis [Evidence IGI]; GO:0030902 - hindbrain development [Evidence IGI]; GO:0030901 - midbrain development [Evidence IGI]; GO:0030917 - midbrain-hindbrain boundary development [Evidence IMP]; GO:0048666 - neuron development [Evidence IGI]; GO:0030182 - neuron differentiation [Evidence IGI]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] citation : [PUBMED 1363401] codon_start : 1 exception : mismatches in translation function : transcription factor note : engrailed-1 product : engrailed 1 protein_id : NP_034263.1

name	AI848258 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94363929 GeneID:98452 MGI:2138347
definition	codon_start : 1 product : hypothetical protein LOC98452 protein_id : XP_900985.2

name	Insig2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19526954 CCDS:CCDS15236.1 GeneID:72999 MGI:1920249
definition	GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006991 - response to sterol depletion [Evidence IDA] codon_start : 1 product : INSIG-2 membrane protein protein_id : NP_598509.1

name	Insig2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30017389 CCDS:CCDS15236.1 GeneID:72999 MGI:1920249
definition	GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006991 - response to sterol depletion [Evidence IDA] codon_start : 1 product : INSIG-2 membrane protein protein_id : NP_835183.1

name	Ccdc93 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:68448542 CCDS:CCDS15237.1 GeneID:70829 MGI:1918079
definition	codon_start : 1 note : isoform a is encoded by transcript variant 1 product : coiled-coil domain containing 93 isoform a protein_id : NP_001020327.1

name	Ccdc93 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21539631 GeneID:70829 MGI:1918079
definition	codon_start : 1 exception : mismatches in translation note : isoform b is encoded by transcript variant 2 product : coiled-coil domain containing 93 isoform b protein_id : NP_081843.1

name	Ccdc93 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21539651 CCDS:CCDS15238.1 GeneID:70829 MGI:1918079
definition	codon_start : 1 exception : mismatches in translation note : isoform c is encoded by transcript variant 3 product : coiled-coil domain containing 93 isoform c protein_id : NP_084231.1

name	LOC100041926 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149234242 GeneID:100041926
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477273.1

name	Htr5b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754260 CCDS:CCDS15239.1 GeneID:15564 MGI:96284
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation product : 5-hydroxytryptamine (serotonin) receptor 5B protein_id : NP_034613.1

name	Ddx18 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981163 CCDS:CCDS15240.1 GeneID:66942 MGI:1914192
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 protein_id : NP_080136.2

name	LOC666870 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666870
definition	number : 1 pseudo : _no_value

name	LOC100041863 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041863
definition	number : 1 pseudo : _no_value

name	LOC100041863 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041863
definition	number : 2 pseudo : _no_value

name	LOC100041863 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041863
definition	number : 3 pseudo : _no_value

name	LOC100041863 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041863
definition	number : 4 pseudo : _no_value

name	LOC100041863 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041863
definition	number : 5 pseudo : _no_value

name	LOC100041863 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041863
definition	number : 6 pseudo : _no_value

name	LOC100041863 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041863
definition	number : 7 pseudo : _no_value

name	LOC666656 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666656
definition	number : 1 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:232945
definition	standard_name : RH143699

name	(CDS detail)
type	STS
link
xref	UniSTS:234197
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:128607
definition	standard_name : D1Mit260

name	(CDS detail)
type	STS
link
xref	UniSTS:123162
definition	standard_name : 13.MMHAP25FRE7.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:234198
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:128908
definition	standard_name : D1Mit54

name	(CDS detail)
type	STS
link
xref	UniSTS:178453
definition	standard_name : AI173373

name	(CDS detail)
type	STS
link
xref	UniSTS:234199
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:128529
definition	standard_name : D1Mit191

name	(CDS detail)
type	STS
link
xref	UniSTS:234200
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:128750
definition	standard_name : D1Mit389

name	(CDS detail)
type	STS
link
xref	UniSTS:124530
definition	standard_name : 44.MMHAP24FRG11.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:158845
definition	standard_name : U18424

name	(CDS detail)
type	STS
link
xref	UniSTS:178454
definition	standard_name : AI323439

name	(CDS detail)
type	STS
link
xref	UniSTS:128752
definition	standard_name : D1Mit391

name	(CDS detail)
type	STS
link
xref	UniSTS:128568
definition	standard_name : D1Mit226

name	(CDS detail)
type	STS
link
xref	UniSTS:128630
definition	standard_name : D1Mit28

name	(CDS detail)
type	STS
link
xref	UniSTS:116257
definition	standard_name : D1Mit217

name	(CDS detail)
type	STS
link
xref	UniSTS:272950
definition	standard_name : PMC314463P1

name	(CDS detail)
type	STS
link
xref	UniSTS:98355
definition	standard_name : RH104030

name	(CDS detail)
type	STS
link
xref	UniSTS:142987
definition	standard_name : En1

name	(CDS detail)
type	STS
link
xref	UniSTS:128783
definition	standard_name : D1Mit419

name	(CDS detail)
type	STS
link
xref	UniSTS:128785
definition	standard_name : D1Mit420

name	(CDS detail)
type	STS
link
xref	UniSTS:142247
definition	standard_name : D1Mit470

name	(CDS detail)
type	STS
link
xref	UniSTS:178456
definition	standard_name : AI848258

name	(CDS detail)
type	STS
link
xref	UniSTS:128751
definition	standard_name : D1Mit390

name	(CDS detail)
type	STS
link
xref	UniSTS:272505
definition	standard_name : PMC303355P2

name	(CDS detail)
type	STS
link
xref	UniSTS:113660
definition	standard_name : AU027072

name	(CDS detail)
type	STS
link
xref	UniSTS:167280
definition	standard_name : AU022885

name	(CDS detail)
type	STS
link
xref	UniSTS:234201
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:158843
definition	standard_name : AA959903

name	(CDS detail)
type	STS
link
xref	UniSTS:143429
definition	standard_name : Htr5b

name	(CDS detail)
type	STS
link
xref	UniSTS:178452
definition	standard_name : X69867

name	(CDS detail)
type	STS
link
xref	UniSTS:235514
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:123980
definition	standard_name : 32.MMHAP32FLC5.seq

name	LOC100042447 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149234271 GeneID:100042447
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 125 ESTs, 2 Proteins product : similar to 2810416G20Rik protein pseudo : _no_value transcript_id : XR_033831.1

name	Gm101 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149234237 GeneID:226356 MGI:2684947
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 1 Protein product : gene model 101, (NCBI) pseudo : _no_value transcript_id : XR_033084.1

clone name	MSMg01-396D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470D14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-187N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-205C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-187L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-061P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-233P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-199F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298I01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047A19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240K16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022M02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121A12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-011D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184L13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036I18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132A13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147N12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345I05
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-057N10.T7 (MSMg01no057_n10.b1)	MSMg01-057N10.TJ (MSMg01no057_n10.g1)
ACC	AG284897	AG284898
length	810	721
length of high quality (start - end)	142 (181 - 322)	36 (72 - 107)
definition	CHROMAT_FILE: MSMg01no057_n10.b1 PHD_FILE: MSMg01no057_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:55 2005	CHROMAT_FILE: MSMg01no057_n10.g1 PHD_FILE: MSMg01no057_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:55 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TTTTTTNTTTTTTTTTTTTTTCGNNGNCCCCCTGCTCCCCCACTAACTAC CTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAACCG CGGAATTCCCTTTATATTCCAACATCATCCTATCGGGTTGTCGCCTCTAG AAAGCCCTACCTGATGCAGCAAGGACACCTGATGAGTACCAAGGAATCCT GAAGGCCAGGCCTCTCCTTAGAGTTAGCCTTCCAAAGTGACATGGATGCC TGCAAATTTGTTGATTTTCTGATTTTCCAGGGTCTGGCTCATAGTCATCA CCATGTTACTGCCCAGTGAGTGATCTCCCAGAACCAGAGGCTGAGCCCAG GAAGTCTACAAGCCCACTGGGCCACTTATTCACACATGTATGTGGAAGCT TCCCAGTATAGATCTTTCTGAAAGGCCCCAACGCAAAATATAAGTCTATA ATGTGCACGATCAATACTAACCCCCGCGTGTTCGGGTGGTGTGAAGCAAA CCCTGTCCGTACGTTTGTTTTTTTCGCTGTTCACTCTTTTGTTCTTTCGC CTTACCCCTCTTATCCTTACTTTTCCCACCCACTCCCCTTACCCTCACTT CTTTTACTGCTTCCCCCTACCCTCCTTTCCCCTTTTTCACTCGTACCATA CTACATGCAATCTATAAAATCATATCTTTTTTACCCCTGAACATTAGTAA TTCATTAATCCCCATACGCATCTCCCCTATTCTTCCTCCCTCCTTTTCCC CCCTTACTACTCTTATTCTATCTTTTATCTCTCCCCTTCCATATAAATTA TATATTGCCG	CATGCTGTGTGTGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXCCCTTTTCTCTGCGTGAAAAAAGAACCCT TGTATATGCAGGGCAAGCAGCCCACCACTGAGCTCCACCCCACCCCTACC CTTGGTTTTCTTTTGGGGGCAAATGGTGTCTCAGGGAAGGGCTTGGATGC ACAATGCTTTCAAAGGAAGGAAGACTTTGGAGTTAGACTACACTAAGAGA GCTATTCTTGCGAAGTTCACACCAGCTGAGGTCACGCCGCAGGTAATCAC TTTGGAAAAGCGTCCTAATTTTATCTTTACTGCCCTATCACACCCTGACC ATAATAATTTATAGGGCCTCCCTCTCTACTCAGCTTTTATCTTCTAGCTA TAGCCCATTCACGACGCCCCGCCATCACAGCCTATCTGCTGTTATCTCCC CCGCCCTCCCCCTTGTTCTTTGCTTTCTCGCATTCTCCTCTTACTGTAAT GGTGCCCTCTTACTGGTTGCCGCATCTTCATCATCTAACATCTCCTACTC CTGTTCCTCGACCTGCTCCCTGGTCCACTCTTCTTTTTTCCCTCTTCTCT CTGTATCTCCCCTCTTCTCACCTCTCCATCTCGTCCTCCGCTGACCTTCT AATCGGCTCCTCATTCACCGCAACTAATCACCTCCGTGCTCTACTCCCGT CTTCCTCTTTCTCCTACTCTC
quality values	Open. Hide. 7 7 7 7 7 3 0 3 7 7 24 29 37 37 31 18 19 24 19 17 9 8 3 0 0 3 0 3 7 7 8 8 10 10 10 10 14 15 20 19 15 10 10 11 6 6 6 6 8 10 11 8 7 8 12 12 8 10 10 15 10 22 19 32 30 27 26 28 39 43 32 28 28 30 27 29 30 33 33 33 33 30 33 25 27 11 8 8 10 10 9 9 7 8 8 8 8 8 17 13 28 26 30 30 28 28 33 33 59 59 47 39 23 23 11 9 9 6 6 6 6 8 6 8 10 10 19 19 28 35 37 43 43 48 47 21 19 9 9 9 9 17 24 47 59 57 57 57 57 57 47 43 33 30 30 30 43 47 48 48 48 39 34 33 25 21 21 15 17 17 24 26 22 25 10 9 9 9 9 15 17 30 30 30 30 31 31 22 22 22 37 37 39 33 34 28 34 40 31 29 32 32 30 31 32 47 47 35 35 35 47 47 48 47 48 46 47 32 41 41 24 20 28 27 42 39 43 43 43 44 57 57 57 48 43 43 39 37 43 44 47 54 47 42 42 37 42 37 47 47 54 48 48 48 48 48 57 57 57 47 47 47 50 50 50 57 50 54 54 57 54 54 50 52 52 52 52 42 42 42 37 43 43 43 32 32 22 16 16 12 9 9 15 15 20 32 41 41 43 43 43 39 43 43 44 42 44 37 27 27 22 21 21 21 21 28 28 33 36 36 23 12 16 12 14 10 13 18 23 12 11 11 13 13 11 11 14 15 15 18 18 18 30 15 18 12 15 19 21 12 12 12 16 12 14 14 21 16 12 13 13 18 19 28 28 32 28 21 13 13 13 9 8 8 8 8 8 10 11 10 9 9 9 9 10 9 9 9 10 10 22 18 18 14 14 9 8 8 8 10 8 13 18 24 18 12 12 12 12 12 15 15 15 13 13 12 15 8 8 8 8 10 8 10 9 9 8 12 10 10 10 12 11 11 11 11 11 12 12 12 12 12 11 11 11 19 10 9 9 9 9 10 10 10 12 13 12 12 11 11 11 8 8 8 8 8 8 8 8 8 8 9 8 9 10 10 8 6 6 6 6 8 8 8 8 10 12 12 12 13 13 13 15 19 12 12 15 13 13 14 14 14 15 15 18 10 10 10 8 8 8 9 9 9 12 12 11 11 10 13 9 9 8 10 7 9 9 10 10 10 10 8 11 11 11 15 15 15 12 11 8 8 6 6 6 6 10 6 6 6 7 10 10 10 10 8 8 8 8 8 8 12 12 12 20 18 14 11 11 11 14 11 11 11 10 8 10 9 6 10 6 8 8 8 11 26 22 13 11 8 8 8 10 6 6 6 6 6 8 9 9 16 10 10 8 6 6 6 8 8 8 13 14 14 12 9 8 8 8 9 8 10 8 8 8 8 10 9 10 8 8 8 8 10 13 8 6 8 6 6 8 6 6 6 6 6 8 8 8 8 8 8 13 8 10 6 6 8 8 8 8 8 8 10 13 11 8 8 8 8 8 8 10 8 8 8 18 18 18 13 13 13 15 11 11 11 12 11 11 9 9 9 10 10 15 11 11 11 13 8 8 8 8 8 8 8 8 8 8 8 9 12 13 13 9 9 9 8 8 11 8 8 8 8 13 12 8 9 9 9 11 9 9 8 8 8 8 8 8 8 8 8 9 18 18 10 9 9 9 10 10 8 8 8 8 12 8 8 6 6 8 8 10 8 6 6 6 8 8 8 8 12 16 13 15 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 11 11 12 12 13 17 11 9 7 7 7 7	Open. Hide. 10 13 10 10 8 9 9 9 9 7 7 8 8 8 8 8 22 24 32 18 18 14 14 14 20 34 28 25 12 8 7 7 7 11 8 12 10 13 10 10 10 11 11 16 16 14 10 10 10 23 23 36 32 32 20 21 21 18 22 17 21 14 12 11 9 8 11 13 16 18 22 37 37 37 37 43 48 48 48 47 36 34 33 22 22 25 28 30 30 30 32 27 31 24 25 25 36 33 37 33 40 28 28 22 22 22 24 24 28 24 24 24 24 20 22 20 28 28 23 17 10 8 8 8 13 17 28 36 32 39 35 39 39 37 37 32 30 30 30 39 32 35 35 39 39 48 48 48 41 37 37 37 37 23 23 11 11 12 23 25 30 30 28 32 28 20 13 12 9 9 9 17 17 28 17 17 16 16 17 31 26 26 18 18 18 18 19 25 28 30 30 31 32 28 17 17 17 24 32 15 17 17 18 18 15 13 13 15 24 32 24 28 30 30 41 36 32 30 30 33 35 35 35 36 36 27 24 27 20 16 16 13 14 14 13 12 18 12 12 9 8 8 8 8 8 8 11 21 27 27 42 42 43 43 32 38 12 12 12 11 12 12 19 21 18 18 12 11 11 16 13 17 19 20 16 18 13 24 12 12 11 10 10 8 8 8 12 10 13 15 12 13 12 19 12 12 15 19 15 20 28 34 40 25 25 19 24 13 17 12 16 12 12 17 30 30 35 23 23 20 20 12 12 12 23 13 17 17 19 19 37 23 25 23 26 18 9 9 9 9 20 10 10 15 17 18 15 16 15 11 11 11 12 12 12 12 14 15 23 15 12 12 12 8 8 6 6 6 8 8 8 9 9 9 9 9 9 10 10 10 8 8 8 8 10 10 8 9 8 8 10 10 14 13 21 12 11 11 12 18 18 12 11 11 13 16 17 15 19 15 16 15 10 8 8 8 12 10 10 10 11 11 11 11 12 11 11 11 12 10 8 8 8 6 6 8 8 8 9 10 10 8 8 8 10 13 13 21 24 23 16 14 12 12 12 16 12 14 14 22 26 28 19 11 11 11 10 22 9 11 12 19 14 13 12 9 9 9 9 10 10 11 12 13 12 12 12 12 12 12 13 11 10 9 9 9 9 9 11 12 12 12 11 10 10 11 13 15 29 12 11 7 7 8 8 8 8 8 8 10 8 8 8 8 10 8 6 6 6 6 8 8 8 12 10 8 9 9 9 11 10 10 10 11 8 8 8 8 8 8 11 14 9 8 11 11 9 10 10 8 8 8 8 8 8 8 8 10 11 10 8 8 8 9 10 10 11 14 13 13 13 13 13 10 10 10 11 11 15 10 10 10 14 17 15 16 16 18 11 11 13 11 12 11 13 13 19 23 12 17 14 14 15 19 15 14 16 12 10 8 8 8 8 8 10 12 12 14 9 9 9 11 9 9 14 12 16 14 14 14 14 9 8 8 8 8 14 10 15 12 12 10 12 10 12 11 10 10 9 11 13 15 15 21 13 12 12 10 10 10 8 8 8 8 8 8 6 8 6 7 8 8 18 12 11 8 8 8 8 8 8 9 14 12 16 14 12 12 9 9 12 10 14 9 10 10 10 9 9 11 11 15 11 12 10 10 10 12 12 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no057_n10.b1 MSMg01no057_n10.b1 CHROMAT_FILE:
MSMg01no057_n10.b1 PHD_FILE: MSMg01no057_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:55 2005
         (142 letters)



>mm_chr1_122683858_122684399
          Length = 542

 Score =  252 bits (130), Expect = 1e-71
 Identities = 139/142 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatgagtaccaaggaatcctgaaggccaggcctctccttagagttagccttccaaagtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gatgagtaccaaggaatcctgaaggccaggcctctccttagagttagccttccaaagtga 283

                                                                       
Query: 61  catggatgcctgcaaatttgttgattttctgattttccagggtctggctcatagtcatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 catggatgcctgcaaatttgttgattttctgattttccagggtctggctcatagtcatca 223

                                 
Query: 121 ccatgttactgcccagtgagtg 142
           || ||| |||| ||||||||||
Sbjct: 222 ccgtgtgactgtccagtgagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 542
Length adjustment: 8
Effective length of query: 134
Effective length of database: 534
Effective search space:    71556
Effective search space used:    71556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information