BAC Information

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BAC

Clone NameMSMg01-057O16
Chromosome1 (Build37)
Map Location 90,178,380 - 90,178,885
singlet/doubletsinglet
Overlap genenone
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822
Downstream geneTrpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057O16.T7 (MSMg01no057_o16.b1)MSMg01-057O16.TJ (MSMg01no057_o16.g1)
ACCAG284956AG284957
length684671
length of high quality
(start - end)
524 (36 - 559)525 (53 - 577)
definitionCHROMAT_FILE: MSMg01no057_o16.b1 PHD_FILE: MSMg01no057_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:02 2005CHROMAT_FILE: MSMg01no057_o16.g1 PHD_FILE: MSMg01no057_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATTTCAAGAGAATGCGCGGAATTCTCTGTT
TATCCCTTTTCCCCATTTTTTTTATTTGGGTTATTTGATTTTCTGGAGTT
TAACTTCTTAAGTTCTTTGTAAATTTTGGATATTAGCCCTCTATCAGATG
TAGTATTGGTAAAGAACTTTTTCCCAATTCGTTGTTTGTTGGTTTGTCCT
ATTGACAGTGTCCTTTGACTTATAGAAAAATTTTCAGTTTTAGGAGTTCC
CATTTGTTAATTTTTGATCTTAGAGCCTGAGCCATTGGTGTTCCATTCAG
GAAAATTTCCCCTGTGCCAATGTGTTCAAGATTCTTTCCCATTTTCTCTT
CTATTAGACTCAGTGCATCTGGTTTTATGTGGAGGTCCTTGATCCAGTTG
GACTTGACCTTTGTACAAAGAGTTAAATTGGATCGATTTGAATTCTTCTG
CATTTAGACTGCCAGTTAGAATTTGTTGAAAATTTTGTCTTTTTTCCATT
GTGTGATTTGACTCTTTGTCAAAGGTCAAGTGACCATAGGTATGTGGGTT
TATTTCTGGGACTTCAATTCTATTCTATTGGTCTACCTGTCTGCAACTCA
CTTTTTGCTCTGTAGTATAGAGTGAGGTCAGGGATGGGGATTTCCCCAGA
AATTCTGACACATTCAATTGAGATTTTTTTTTTC
GGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXACCTGCCTCTGTCTCCCAAGTGATGGGCTTAAAGGCGTGTGCCACCAT
GCCGGGTGGCCATTCTCATTCTTAAATGGAAAAAGTAGCTGAAGATTGAA
TTTCTACAAAAACAGTAAGGTTTACGTTTCAGAGTCTCTCTTTGTGTGGC
TGCTCTGTAGTGTGTTGACTTGACCCCTAATGTCATGAACATCTTGGTAG
TAAGATGTTCTACCTGTGACCAGCAAAGACAGCCAACTCTTTACCTTGTA
ATTTCGTTCTGTCACTAGGTATTGGATGGCCTTTGGATGGCCTTTGGTTA
GTTATAACCACTGTTTGAGTTCCAAGGAAAATAGGGCCAAGAGGGGACCA
AGTCTGCCCAAAGTGGGTGTGTGGCATAGTATAATCATTCCTATGTACAT
TTATATTTTTGTTAGTGACTCCACTCTAGGAAGGTCATCTAGGAACATCG
CTATCACCCACTGCCTAAGTTCACTCAGGATAGCAAGGGGACACAGATTG
CTTTTGACCCAGCATCTGAATATTTAGGGGAGGAGAGGTGGTGAGCATGC
CTTGAAACTGGACTATAGAACGTTCCTTCAATTATAAGAAGTATAATATG
GTACATAGAGGAATTTGATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_o16.g1 MSMg01no057_o16.g1 CHROMAT_FILE:
MSMg01no057_o16.g1 PHD_FILE: MSMg01no057_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:02 2005
         (525 letters)



>mm_chr1_90178179_90179103
          Length = 925

 Score =  828 bits (428), Expect = 0.0
 Identities = 492/524 (93%), Gaps = 18/524 (3%)
 Strand = Plus / Plus

                                                                       
Query: 2   cctgcctctgtctcccaagtgatgggcttaaaggcgtgtgccaccatgccgggtggccat 61
           ||||||||||||||||||||| || |||||||||| || ||||||||||| |||||||||
Sbjct: 202 cctgcctctgtctcccaagtgctgagcttaaaggcatgcgccaccatgcctggtggccat 261

                                                                       
Query: 62  tctcattcttaaatggaaaaagtagctgaagattgaatttctacaaaaacagtaaggttt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tctcattcttaaatggaaaaagtagctgaagattgaatttctacaaaaacagtaaggttt 321

                                                                       
Query: 122 acgtttcagagtctctctttgtgtggctgctctgtagtgtgttgacttgacccctaatgt 181
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 acatttcagagtctctctttgtgtggctgctctgtagtgtgttgacttgacccctaatgt 381

                                                                       
Query: 182 catgaacatcttggtagtaagatgttctacctgtgaccagcaaagacagccaactcttta 241
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 382 catgaacatcttggtagtaaaatgttctacctgtgaccagcaaagacagccaactcttta 441

                                                                       
Query: 242 ccttgtaatttcgttctgtcactaggtattggatggcctttggatggcctttggttagtt 301
           |||||||||||||||||||||||||||||||||||||||||||           ||||||
Sbjct: 442 ccttgtaatttcgttctgtcactaggtattggatggcctttgg-----------ttagtt 490

                                                                       
Query: 302 ataaccactgtttgagttccaaggaaaatagggccaagaggggaccaagtctgcccaaag 361
           ||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct: 491 ataaccactgtttgagttccaaggaaaatagggccaagaggagatctagtctgcccaaag 550

                                                                       
Query: 362 tgggtgtgtggcatagtataatcattcctatgtacatttatatttttgttagtgactcca 421
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgggtgtgtggcatagtatagtcattcctatgtacatttatatttttgttagtgactcca 610

                                                                       
Query: 422 ctctaggaaggtcatctaggaacatcgctatcacccactgcctaagttcactcaggatag 481
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 611 ctctaggaaggtcatctaggaacatcgctattacccactgcctaagttcactcagggtag 670

                                                       
Query: 482 caaggggacacagattgcttttgacccagcatctgaatatttag 525
           |||||||||||| |||||||||||       |||||||||||||
Sbjct: 671 caaggggacacatattgcttttga-------tctgaatatttag 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)