BAC Information

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BAC

Clone NameMSMg01-058A16
Chromosome1 (Build37)
Map Location 178,895,609 - 178,988,484
singlet/doubletdoublet
Overlap geneSdccag8, Akt3
Upstream genePld5, B020018G12Rik, Cep170, LOC666235
Downstream geneZfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058A16.T7 (MSMg01no058_a16.b1)MSMg01-058A16.TJ (MSMg01no058_a16.g1)
ACCAG285050AG285051
length703710
length of high quality
(start - end)
400 (46 - 445)233 (123 - 355)
definitionCHROMAT_FILE: MSMg01no058_a16.b1 PHD_FILE: MSMg01no058_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:11 2005CHROMAT_FILE: MSMg01no058_a16.g1 PHD_FILE: MSMg01no058_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,895,609 - 178,896,003)(178,988,252 - 178,988,484)
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAGAGGATCCGCG
GAATTCCTTTTCTCCTTGGGTTTGCTGTTTGGGAATACAGTCTTCTGTGC
CCCTGACTAGCCTGTAACTTGTATATAGATGCGACAGGCCTTAGACTGGC
AACCCATTGCTAGGATCAAAGGTGTCCACCTGTGTGTTGAAATCTTCACC
CTAGCTGGTGGCACTGTTCAGAGAGGTGATGGCACCTGGCTAGGGGAAGC
TTACAGGCAGCATTGTCCATGTTACAGCTCTGAGAGAAAAGGTCTCCCTA
ATGCAAGTGTTACAGCTTTGAATAGAAAGGTGTCCTGCCAGTCAGGAGCC
AAGGAGACCTACATTGTAACAACAGCCTCACCTGAGATTTGTTGGGAGAG
ACACAGGAGAGTGATTGCCTCGGCAAGAAGCAGCAAAGGACTGAGTGGAA
GGCAGACTTTAAACAGTCTTTCCTGGGGGTGGGTGGGACGTTCCAGAGTG
GTCTGACGTTCCACAGTGGTCTGAGATTGGCAGGTTTGTGACAGCTCTTG
GGTCTCTTACTCTCTATAATGGAGCTTGCCCACTTGCACCTTGATAGGTG
GGGTCCAGCCTTTATAGCCATTATAACGCTCTGTGTCTGAAGCCTGGTGG
GTGGAAATATTCAGGCGTAGCTCGTGATCATCACTGCCCCTACCCCCTGG
GGC
CAATGCTGCGGGTAGCCTGGAGGCCGCCTGTCAAAAAAATTTAGGTGAAC
TATAGATTTTCCCCAAAGGATTCTTTCTGTTCTGTTCACATCTGTGACCT
TAGCCAAAAGACGTATCACACAAGATAACTGCTTAGAGACTAAAGTTATC
TAGAAGTGTCTTCGCTTGTCTGTGTGCACTGCTGCTAGGTGCCCAGTGAA
AGCTATTCAAGTTGTTGACAGAAGCACTTACAGCCTCCCTGTGGCTTAGG
TGTCTTCAAAATGGCCAGGGTTCTTTGGCCTAGCAAGTGTCCTCGGAACA
AATGAAAAGCAACCTTGTGTTCACTCCCTCCTCCCCTCTCTCCCTTTTAT
TTTCAATTTATTTAACTGTTTAAAATTCTATTTAAAAATTTCTTTATATT
TTATCGTTCGGATATAGTTCACATGTCATATAAAATTTTAAGTCAACATT
TACTTTTTCAAATGTTTAAAGATGTGCAACTATCGCTTGTAATTCTAACA
TGTTTTAATCATTCCAATTATGACTTCACTTTTATTAGCTTCTCAATCTT
TCTTTCTAGCTATTGTAAACTAACTTTTCTCTTTGAAGCATTTTTCTGAA
CATTTCCTGTAAATAAAATTTTATTGACATGTACTTTGTAGGCCCGGCTT
CTTCCCTTAACAGATTACACCTCCCACCTATATTGTTTGGTACCCTATGT
CCTTGGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_a16.b1 MSMg01no058_a16.b1 CHROMAT_FILE:
MSMg01no058_a16.b1 PHD_FILE: MSMg01no058_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:11 2005
         (400 letters)



>mm_chr1_178895404_178896203
          Length = 800

 Score =  733 bits (379), Expect = 0.0
 Identities = 391/395 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccttttctccttgggtttgctgtttgggaatacagtcttctgtgcccctgactag 65
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccttttctgtttgggtttgctgtttgggaatacagtcttctgtgcccctgactag 265

                                                                       
Query: 66  cctgtaacttgtatatagatgcgacaggccttagactggcaacccattgctaggatcaaa 125
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 266 cctgtaacttgtatatagatgcgacaggccttagactggcaacccagtgctaggatcaaa 325

                                                                       
Query: 126 ggtgtccacctgtgtgttgaaatcttcaccctagctggtggcactgttcagagaggtgat 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggtgtccacctgtgtgttgaaatcttcaccctagctggtggcactgttcagagaggtgat 385

                                                                       
Query: 186 ggcacctggctaggggaagcttacaggcagcattgtccatgttacagctctgagagaaaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ggcacctggctaggggaagcttacaggcagcattgtccatgttacagctctgagagaaaa 445

                                                                       
Query: 246 ggtctccctaatgcaagtgttacagctttgaatagaaaggtgtcctgccagtcaggagcc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggtctccctaatgcaagtgttacagctttgaatagaaaggtgtcctgccagtcaggagcc 505

                                                                       
Query: 306 aaggagacctacattgtaacaacagcctcacctgagatttgttgggagagacacaggaga 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aaggagacctacattgtaacaacagcctcacctgagatttgttgggagagacacaggaga 565

                                              
Query: 366 gtgattgcctcggcaagaagcagcaaaggactgag 400
           |||||||||||||||||||||||||||| ||||||
Sbjct: 566 gtgattgcctcggcaagaagcagcaaagaactgag 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no058_a16.g1 MSMg01no058_a16.g1 CHROMAT_FILE:
MSMg01no058_a16.g1 PHD_FILE: MSMg01no058_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:12 2005
         (233 letters)



>mm_chr1_178988052_178988684
          Length = 633

 Score =  435 bits (225), Expect = e-126
 Identities = 231/233 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agataactgcttagagactaaagttatctagaagtgtcttcgcttgtctgtgtgcactgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agataactgcttagagactaaagttatctagaagtgtcttcgcttgtctgtgtgcactgc 374

                                                                       
Query: 61  tgctaggtgcccagtgaaagctattcaagttgttgacagaagcacttacagcctccctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgctaggtgcccagtgaaagctattcaagttgttgacagaagcacttacagcctccctgt 314

                                                                       
Query: 121 ggcttaggtgtcttcaaaatggccagggttctttggcctagcaagtgtcctcggaacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggcttaggtgtcttcaaaatggccagggttctttggcctagcaagtgtcctcggaacaaa 254

                                                                
Query: 181 tgaaaagcaaccttgtgttcactccctcctcccctctctcccttttattttca 233
           ||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 253 tgagaagcaaccttgtgctcactccctcctcccctctctcccttttattttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)