BAC Information

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BAC

Clone NameMSMg01-058E23
Chromosome1 (Build37)
Map Location 44,169,689 - 44,170,180
singlet/doubletsinglet
Overlap geneKdelc1
Upstream geneAI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2, 1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik
Downstream geneBivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1, LOC100041738, LOC100041752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058E23.T7 (MSMg01no058_e23.b1)MSMg01-058E23.TJ (MSMg01no058_e23.g1)
ACCAG285255AG285256
length706716
length of high quality
(start - end)
492 (63 - 554)471 (78 - 548)
definitionCHROMAT_FILE: MSMg01no058_e23.b1 PHD_FILE: MSMg01no058_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:31 2005CHROMAT_FILE: MSMg01no058_e23.g1 PHD_FILE: MSMg01no058_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAAATCGGCGGAATTCTTACT
TTCCTTCGAGGCCCTGTGTTAGCTTGCACCGACATCATATCCAGACTTAC
TCTGGAAGACAGAAAACAGAACATGTCTTCCTCTAAAACTATCAGTGCAT
GAAAGCAGATGGAGCAGAACTCACCAAAGAGAGCAAACCAAGGCTCGGGG
TCAACCCTGATCATCTCTCACCGGCCCATGGTTTCTAGAACAGAGTCAGT
CAGGTCGTAGGTAGGCATCACAATATCCCTGGACTCTGTGGAGCCACACC
AGGAAAAGATCGGCTGATTGTTGGAGTTGGATTTCTTTTTTTCCAAAGGC
CAGTCTCCCAAATTAACAAAAAATTCCACATCTGGCATCCTCACCTAGAG
GTGGGGATAACAAGAGTTTATTCATAGTTTTTGCATTGCACATGATCATG
TATTTATCAGTTAAAATTAGCATTTGGAACTAAGTTTGAGGGTACTTATC
TGAGATCGTAGCATCTGTGGGGCTCAGGCAGGATGATCCTGAGTTGGATG
CTGGTGTGCTAAATTGGCTAAATAAGGCTAGATTGGGCTACATAGTTCAG
AGTCAGTGCGGGCAATACACTGCCTCAAAATATGGAAAACGGGATCTGTT
TATAACTTTAACCCGATTTGATATATATGACACTCCCATCCGAAAAGGTC
ACCACT
NNAACGATGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCCCGAATTCAGCAGACTGCAAGAATTCCCTTAC
CTGTTGGGGAGTCTTGGGTGTTGGAAGGCACAGGACAGTTTCCTTCCTGG
CCTCAGAGAGCCATCTCTAACCTTCTTTTAATATGTATCCTAGTTAAGTA
ACCTGTGATTGGCAGAGTTGAGCTTTCTTCATAGAGGCTCTGTAGCCTAA
ATTTACCAGGTCCTCCAAGAGGTCCTGGGTTCCCCTCAGGTATTTTTGCT
TCCTCTCCTGCCACCAGGAGGTAATCTACTTACTTCAAAAGAGAGTAGGG
TGCTTGGTTCTGTACTTACTCAAGATGGTAGGCAAGTTCTTAAATCCCTG
CAGCAGAAGGGTCCAAGTTAGCTGTCCACTAATCCCAAGCTCTGGGTCAT
GCCATTCAAAGGATAAGAAGTCTTGCTGCCCAGGGCCAGCCCCAGCCAGG
TTTTCATTCGTGTCAGTTCTTTTTGAGGCAGTGGAAGAGGGAAGAGCATC
AGCAGAGAGTAGAACTTTGTCTTATAAGATATTTAGGGTTGCTGTATAAT
AATAAAAAGTTTACTTATCTAAATCTATACCTTGCTACTGTATCTGACCT
GCCTTCTGTGTGCTCTGAGACCAGAAACTGCAGTTTCTGGCACTTAGCAC
CTCTTCCTAATACAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_e23.b1 MSMg01no058_e23.b1 CHROMAT_FILE:
MSMg01no058_e23.b1 PHD_FILE: MSMg01no058_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:31 2005
         (492 letters)



>mm_chr1_44169489_44170380
          Length = 892

 Score =  936 bits (484), Expect = 0.0
 Identities = 490/492 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgtgttagcttgcaccgacatcatatccagacttactctggaagacagaaaacagaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgtgttagcttgcaccgacatcatatccagacttactctggaagacagaaaacagaac 260

                                                                       
Query: 61  atgtcttcctctaaaactatcagtgcatgaaagcagatggagcagaactcaccaaagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtcttcctctaaaactatcagtgcatgaaagcagatggagcagaactcaccaaagaga 320

                                                                       
Query: 121 gcaaaccaaggctcggggtcaaccctgatcatctctcaccggcccatggtttctagaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaaaccaaggctcggggtcaaccctgatcatctctcaccggcccatggtttctagaaca 380

                                                                       
Query: 181 gagtcagtcaggtcgtaggtaggcatcacaatatccctggactctgtggagccacaccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtcagtcaggtcgtaggtaggcatcacaatatccctggactctgtggagccacaccag 440

                                                                       
Query: 241 gaaaagatcggctgattgttggagttggatttctttttttccaaaggccagtctcccaaa 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaagatcggctgaatgttggagttggatttctttttttccaaaggccagtctcccaaa 500

                                                                       
Query: 301 ttaacaaaaaattccacatctggcatcctcacctagaggtggggataacaagagtttatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaacaaaaaattccacatctggcatcctcacctagaggtggggataacaagagtttatt 560

                                                                       
Query: 361 catagtttttgcattgcacatgatcatgtatttatcagttaaaattagcatttggaacta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catagtttttgcattgcacatgatcatgtatttatcagttaaaattagcatttggaacta 620

                                                                       
Query: 421 agtttgagggtacttatctgagatcgtagcatctgtggggctcaggcaggatgatcctga 480
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtttgagggtacttatccgagatcgtagcatctgtggggctcaggcaggatgatcctga 680

                       
Query: 481 gttggatgctgg 492
           ||||||||||||
Sbjct: 681 gttggatgctgg 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)