Query= MSMg01no058_j15.b1 MSMg01no058_j15.b1 CHROMAT_FILE:
MSMg01no058_j15.b1 PHD_FILE: MSMg01no058_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:53 2005
(310 letters)
>mm_chr1_55822682_55823393
Length = 712
Score = 538 bits (278), Expect = e-157
Identities = 300/308 (97%), Gaps = 2/308 (0%)
Strand = Plus / Minus
Query: 5 gaattctgctatcctatctcgaaaaattacctgtgggcttaggagatgtcctgtgcttcc 64
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattctgctatattatctcgaaaaattacctgtgggcttaggagatgtcctgtgcttcc 453
Query: 65 ttcatcgtgccattaaaattccactttcactgtccatgatgaaacatttgtgacactcac 124
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 452 ttcatcgtgacattaaaattccactttcactgtcaatgatgaaacatttgtgacactcac 393
Query: 125 cttcccttctccacaggcttgtgagatgtgtgttgttatgactcttactttacagattcc 184
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 392 cttcccttctccacaggcttgtgagatgtgtgttgttataactcttactttacagattcc 333
Query: 185 aaactccaatgtctagtatatccaggatgtaggagagaacctaaggaaagcaatctcgag 244
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 332 aaactccaatgtctagtatatccaggatgtaggagagaacctaaggaacgcaatctcgag 273
Query: 245 cctgtgttctttgcatgccactgtatc--ctctcatctttattaatttactttgtcaaga 302
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 272 cctgtgttctttgcatgccactgtatcctctctcatctttattaatttactttgtcaaga 213
Query: 303 agatgtgc 310
||||||||
Sbjct: 212 agatgtgc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 712
Length adjustment: 9
Effective length of query: 301
Effective length of database: 703
Effective search space: 211603
Effective search space used: 211603
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no058_j15.g1 MSMg01no058_j15.g1 CHROMAT_FILE:
MSMg01no058_j15.g1 PHD_FILE: MSMg01no058_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:53 2005
(626 letters)
>mm_chr1_55738191_55739216
Length = 1026
Score = 1143 bits (591), Expect = 0.0
Identities = 606/611 (99%)
Strand = Plus / Plus
Query: 1 attacggctttccgttttaatcctttgtgagtttccctggtagcactgctaatcgagttt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attacagctttccgttttaatcctttgtgagtttccctggtagcactgctaatcgagttt 260
Query: 61 aactatgttgaagtgtcaagcctctttctctaagagattaattagagatccgtctccaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactatgttgaagtgtcaagcctctttctctaagagattaattagagatccgtctccaag 320
Query: 121 ctaattgtaaattactgtactttttcattgttaagtgtttagtggaaatgttgtttagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaattgtaaattactgtactttttcattgttaagtgtttagtggaaatgttgtttagga 380
Query: 181 aaatgattatagattataaatagtttcattaagtatttcatttctctgtctctttcccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgattatagattataaatagtttcattaagtatttcatttctctgtctctttcccag 440
Query: 241 gtctatagtaataaatgactttaatattcttttcactgataatttaaatgagctctagaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtctatagtaataaatgactttaatattcttttcactgataatttaaatgagctctagag 500
Query: 301 gatgaaacattatattgaaacaagtttaatttaattgacccagcatggcttgagatcctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatgaaacattatattgaaacaagtttaatttaattgacccagcatggcttgagatcctt 560
Query: 361 gctgtcttgggatcatgatacttttatgattaagaaccagaaaagaatttgttatgtaaa 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgtcttgggatcatggtacttttatgattaagaaccagaaaagaatttgttatgtaaa 620
Query: 421 gactgttctttatttccacactttgggatgaacactcctttggagattcgatctctttac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gactgttctttatttccacactttgggatgaacactcctttggagattcgatctctttac 680
Query: 481 agctgatggggtgaacgtttagactatcctcctctcatgagttctgaccgtcacttctat 540
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agctgatgaggtgaacgtttagactatcctcctctcatgagttctgaccgtcacttctat 740
Query: 541 tcacagagggcaacttggataggcctgtagtgaaactgataccttacatagcaacagtaa 600
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 741 tcacagagggcaacttggataggcctgtagtgaaactgacaccttacatagcaacagtaa 800
Query: 601 aaaacaacaaa 611
|||||||||||
Sbjct: 801 aaaacaacaaa 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
