Query= MSMg01no059_d11.b1 MSMg01no059_d11.b1 CHROMAT_FILE:
MSMg01no059_d11.b1 PHD_FILE: MSMg01no059_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:40 2005
(665 letters)
>mm_chr1_25611814_25612874
Length = 1061
Score = 1203 bits (622), Expect = 0.0
Identities = 651/664 (98%), Gaps = 8/664 (1%)
Strand = Plus / Plus
Query: 4 ggaattcttttagt--tactcatgaggaatatgttcttgtactggactaatattgggaat 61
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttttagcagta-tcatgaggaatatgttcttgtactggactaatattgggaat 262
Query: 62 gcagaggcatagataaatcattgatgcctggttatctatcagaagggcacatgtgggtaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gcagaggcatagataaatcattgatgcctggttatctatcagaagggcacatgtgggtaa 322
Query: 122 tttggatgatagctcaaattaatctggacttcttttaaatattgacactggtgtttagca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tttggatgatagctcaaattaatctggacttcttttaaatattgacactggtgtttagca 382
Query: 182 tggacgtacagtaatagatcactcttgattacttcagtatttttacctttacaaatttct 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tggacgtacagtaatagatcactcttgattacttcagtatttttacctttacaaatttct 442
Query: 242 atataacttatttcagaattatctacttggatgtctgtttaaatagtgtttgaagttaca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atataacttatttcagaattatctacttggatgtctgtttaaatagtgtttgaagttaca 502
Query: 302 tctcgtaattttccctattacattgaataatattctaggaaaataaaagtcatgtttgtg 361
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 503 tctcgtaattttccctattacattgaataatattctagcaaaa-----gtcatgtttgtg 557
Query: 362 accccaataatatgacaattgttaaaactatctatacctatttgtatatatacataagca 421
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 accccaatagtatgacaattgttaaaactatctatacctatttgtatatatacataagca 617
Query: 422 tacttaataatgcaaagtataagcttaagattaggggaaatgtctatttaatgacatgtc 481
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tacttaataatgcaaactttaagcttaagattaggggaaatgtctatttaatgacatgtc 677
Query: 482 aacctccttgcaatgtgactgagtataaatgtcatggctatatgttattaattccaagcc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aacctccttgcaatgtgactgagtataaatgtcatggctatatgttattaattccaagcc 737
Query: 542 aggaaattgagaacaatgtgaattctgtagttgaaatgacaaagattatgtataaaatta 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aggaaattgagaacaatgtgaattctgtagttgaaatgacaaagattatgtataaaatta 797
Query: 602 gttatattttccacaaacatggtttttctttctttcttgcactgtcatttttaaaactaa 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gttatattttccacaaacatggtttttctttctttcttgcactgtcatttttaaaactaa 857
Query: 662 caat 665
||||
Sbjct: 858 caat 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1061
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1051
Effective search space: 688405
Effective search space used: 688405
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_d11.g1 MSMg01no059_d11.g1 CHROMAT_FILE:
MSMg01no059_d11.g1 PHD_FILE: MSMg01no059_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:40 2005
(183 letters)
>mm_chr1_25746820_25747403
Length = 584
Score = 271 bits (140), Expect = 2e-77
Identities = 163/176 (92%), Gaps = 11/176 (6%)
Strand = Plus / Minus
Query: 3 tcctgtgaatgctcttctgaagcacggtgatgattctttgttcctgaaacaacctctact 62
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 344 tcctgtgaatgctcttctgaagcatggtgatgattctttgttcctgaaacaacctctact 285
Query: 63 ctgtctgcttctagttttctctagcttgggtgcaccacagttggaacattccttagtttc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ctgtctgcttctagttttctctagcttgggtgcaccacagttggaacattccttagtttc 225
Query: 123 cattctgtgccgttag-tttttcattttggggggtttttgttgttgttgttgttgt 177
|||||||| ||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 224 cattctgtcccgttaggttttt--ttttg--------ttgttgttgttgttgttgt 179
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 584
Length adjustment: 8
Effective length of query: 175
Effective length of database: 576
Effective search space: 100800
Effective search space used: 100800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
