Query= MSMg01no059_i13.b1 MSMg01no059_i13.b1 CHROMAT_FILE:
MSMg01no059_i13.b1 PHD_FILE: MSMg01no059_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:03 2005
(596 letters)
>mm_chr1_53202282_53203279
Length = 998
Score = 961 bits (497), Expect = 0.0
Identities = 532/545 (97%), Gaps = 8/545 (1%)
Strand = Plus / Minus
Query: 2 ggaattcaacactgtt--tcctgacttgtaagaactcgctgcgtcgtgctgtgcaggtta 59
|||||||||||||||| || |||||||||||||||||||||| |||||||||||||||
Sbjct: 542 ggaattcaacactgtttatc--gacttgtaagaactcgctgcgttgtgctgtgcaggtta 485
Query: 60 accatcacctttattcacacgtagaatttgaagtgtcttttttatacttctgttgatttt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 accatcacctttattcacacgtagaatttgaagtgtcttttttatacttctgttgatttt 425
Query: 120 taacactaattttttttaactttaagc-ttttaattttccctttgtatttctggtggaca 178
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 424 taacactaattttttttaactttaagctttttaattttccctttgtatttccggtggaca 365
Query: 179 ttgatttttgaatatagttcctttttcttgttttattttcctgtcaacaataatttgttc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttgatttttgaatatagttcctttttcttgttttattttcctgtcaacaataatttgttc 305
Query: 239 ttataaaaataggtctaataggattataatgtaactattcatgtctttcttaaaagtgaa 298
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 304 ttataaaaataggtctaataggattataatgtaacaattcatgtctttcttaaaagtgaa 245
Query: 299 -ttttttttatttttacataact-tattctagtctggtaagaatttctaggcaggcattc 356
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 244 tttttttttatttttacataa-tgtattctagtctggtaagaatttctaggcaggcattc 186
Query: 357 taccactgaactacaccccaagcttgactggtaagattttctaacagaatcattcaaata 416
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 taccactgaactatatcccaagcttgactggtaagattttctaacagaatcattcaaata 126
Query: 417 gctatcatactctaaagtaggacaaatataggtgaaactcaaatgggtgtttagcgccaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gctatcatactctaaagtaggacaaatataggtgaaactcaaatgggtgtttagcgccaa 66
Query: 477 atactttaaccccaagtatgttgcatgtatatattcagtctgcatgaaatagacctgaaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 atactttaaccccaagtatgttgcatgtatatattcagtctgcatgaaatagacctgaaa 6
Query: 537 aatcc 541
|||||
Sbjct: 5 aatcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 998
Length adjustment: 10
Effective length of query: 586
Effective length of database: 988
Effective search space: 578968
Effective search space used: 578968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_i13.g1 MSMg01no059_i13.g1 CHROMAT_FILE:
MSMg01no059_i13.g1 PHD_FILE: MSMg01no059_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:04 2005
(528 letters)
>mm_chr1_53075711_53076638
Length = 928
Score = 922 bits (477), Expect = 0.0
Identities = 516/529 (97%), Gaps = 2/529 (0%)
Strand = Plus / Plus
Query: 1 caatggaaagagtcaaggatttgttggtcaggcctgggtttgaatcacagtcttagtgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatggaaagagtcaaggatttgttggtcaggcctgggtttgaatcacagtcttagtgtg 260
Query: 61 actggggccaaggttttaacttgtctttcaaatggttgtaatcagcctgacaagtttgct 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 actggggccaaggatttaacttgtctttcaaatggttgtaatcagcctgacaattttgct 320
Query: 121 gaagagatgagaaatagcatacaaaactattcctccaagcatgtgatacccaatcacaca 180
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct: 321 gaagagatgagaaatagcatacaaaactattcctccaggcatgtgatactcaatcacata 380
Query: 181 cacttctcctttgtttgtttgaggggcaagtggactaactggtcatgttgagcaggccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacttctcctttgtttgtttgaggggcaagtggactaactggtcatgttgagcaggccat 440
Query: 241 attccctgggatcccagaattgagaacggcaggcatggagccagatacctgacaaactat 300
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 atcccctgggatcccagaattgagaacggcaggcatggagccagatccctgacaaactat 500
Query: 301 gtgatctggaatatgtaactaggataccccactgacaccaccataagaatcgaccacata 360
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 501 gtgatctggaatatgtaactaggataccccactgagaggaccataagaatcgaccacata 560
Query: 361 gcaataaaaacctggagttctccatgctaatgaggtatctaggtaggaccccagtgttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaataaaaacctggagttctccatgctaatgaggtatctaggtaggaccccagtgttca 620
Query: 421 gccaatgagcttcccttcctgggcattccttcccacaaaatccctggttcaccctgagta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccaatgagcttcccttcctgggcattccttcccacaaaatccctggttcaccctgagta 680
Query: 481 aggtgtattcattcacattt-accatcaaataataacagtttggacaaa 528
|||||||||||||||||||| || ||||||||| |||||||||||||||
Sbjct: 681 aggtgtattcattcacatttgac-atcaaataaaaacagtttggacaaa 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
