Query= MSMg01no059_l11.b1 MSMg01no059_l11.b1 CHROMAT_FILE:
MSMg01no059_l11.b1 PHD_FILE: MSMg01no059_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:17 2005
(575 letters)
>mm_chr1_132198250_132199222
Length = 973
Score = 988 bits (511), Expect = 0.0
Identities = 559/583 (95%), Gaps = 14/583 (2%)
Strand = Plus / Plus
Query: 5 gaattccaggttctacgaatcgctgccagactccacggtatttgccgacatcgcgggtgt 64
||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 193 gaattccaggttctaggaatcgctgccagactccaaggtatttgctgacatcgcgggtgt 252
Query: 65 tctctctttggcacgctgggcaatgtctcccc------------gttaggctgtgggtga 112
|||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 253 tctctctttggcacgctgggcaatgtctcccccaatgtctccccgttaggctgtgggtga 312
Query: 113 ggccgccctgctggaggcgcatcaaggcttatgcatatgggacagatgctccgtgcatct 172
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggccgccctgctggaggtacatcaaggcttatgcatatgggacagatgctccgtgcatct 372
Query: 173 cattactccctaattgccacttgaatccaatgtcttcccgagagtggctctgctccactc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cattactccctaattgccacttgaatccaatgtcttcccgagagtggctctgctccactc 432
Query: 233 aacagaacttcatgctagactttgcctctggaacccacaattataattaaaaatttagtg 292
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 433 aacagaacttcatgctagactttgcctctggaacccacaattagaattaaaaatttagtg 492
Query: 293 caaagccgtattaaagcaaggctgttcataaaggctcgcatccttcccacttagcacagc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 caaagccgtattaaagcaaggctgttcataaaggctcgcatccttcccacttagcacagc 552
Query: 353 agctgtctatcccctgcacacatcagggtctgaggaagcgcatccattatttatttcatt 412
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 agctgtctatcccctgcagacatcagggtctgaggaagcgcatccattatttatttcatt 612
Query: 413 tttaaaagaatgtatgattttttttcccctcagaggatatattcaaaacttcaaactcag 472
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 613 tttaaaagaatgtatgatttttt--cccctcagaggatatattcaaaacttcaaactcag 670
Query: 473 aagtgtataggacggggattgagaaaagtacacacagaatcttcttgtcgacttctaggc 532
|||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 671 aagtgtataggatggggattgagaaaagcacacacagaatcttcttgtcaacttctaggc 730
Query: 533 ttcacaggtatgactttctagtatgtatgtatttacttaattt 575
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ttcacaggtatgactttctagtatgtatgtatttacttaattt 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 973
Length adjustment: 10
Effective length of query: 565
Effective length of database: 963
Effective search space: 544095
Effective search space used: 544095
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_l11.g1 MSMg01no059_l11.g1 CHROMAT_FILE:
MSMg01no059_l11.g1 PHD_FILE: MSMg01no059_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:17 2005
(467 letters)
>mm_chr1_132338903_132339769
Length = 867
Score = 849 bits (439), Expect = 0.0
Identities = 460/467 (98%)
Strand = Plus / Minus
Query: 1 aacccttatcctctgggggaaaaaaaagctaatggtttttactgctgacttacctccagt 60
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 841 aacccttatcctctgggggaaaaaaaagctagtggtttttactgctgagttacctccagt 782
Query: 61 cctcgtgcacacattattaaaggcttacaggttctagtatttactgcacagtgtcataga 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ccttgtgcacacattattaaaggcttacaggttctagtatttactgcacagtgtcataga 722
Query: 121 aagaacttaggcatctgtggattttagagtcataagggcttcctggaaccaatctttttc 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 721 aagaacttaggcatctgtggattttagagccataagggcttcctggaaccaatctttttc 662
Query: 181 attccttagtagatagcaagagatggctgccttcaaaaagcagtgttttttatttccaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 attccttagtagatagcaagagatggctgccttcaaaaagcagtgttttttatttccaaa 602
Query: 241 gtttcagttattgccagagttgtttgttgaacttaactgtttgttgaatgaatggctcaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gtttcagttattgccagagttgtttgttgaacttaactgtttgttgaatgaatggctcac 542
Query: 301 atcccgattctttctttactgtgatgtacatcatcacttactttaaaaactttatcgttt 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atcctgattctttctttactgtgatgtacatcatcacttactttaaaaactttatcgttt 482
Query: 361 gagaatttcacaaatggatgtctttaaaggtttgcttatctttatatgcacgactatttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 481 gagaatttcacaaatggatgtctttaaaggtttgcttatctttatatgcacgactgtttt 422
Query: 421 tgtctgcatctatatatgtgcaccccctgtgtcaagtgccctatggg 467
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgtctgcatctatatatgtgcaccccctgtgtcaagtgccctatggg 375
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
