NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATCATTTCTGATAGCTGAGTAGTACTCCATTGTGTAAATGTAC
TACATTTGCTGTATCCATTCCTCTGTTGAAGGACATCTGGGTTCTTTCCA
GCTTCTGGCTATTATAAATAAGGCTTCTATGAACATAGTGGAGCATGTGT
CCTTATTACATGCTGGAGAATCTTCTGTGTATATCCCCAGGAGTGGTATG
GCTGGGTCCTCAGGTAGGACTATGTCCAATTTTAGGAGGAACCACCAAAC
TGATTTACAGAGTGGTTGTACCAGCAATGGAGGAGTGTTCCTCTTTTTCC
ACATCCTTGCCAGCATCTGCTGTCACCTGTGGTTTTGATCTTAGCCATTC
TGACCGATGTGAGCCACAATCTCAGGCTTGTTTTGATTTGTATTTCCCTG
ATGATTAACGATGTTGAACATTTCTTTAGGTGCTTCTCAGAGAATTCTTT
GTTTAGCTCTGTATTCCATTTTTAATAGAATTATTTGGTTCTCTGGAGTC
TAACTTTTTGAGTCCTTCGTATATATTGGATATAACCTTCTATTGAATAT
AGGGTTGGTAAAGATCTTTTCCCAATCTTTTGGTTGCCATTTTGTCCTGT
TGACAATGTCCTTGGGCTTAAGAAGCTTTGCAATTTTATGAGGTC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGTCATTAGATTTGAGTGGTTTTG
GTACCTCTGTGATAAAATGACTTAATCAAAACATGAACTATACATGCACA
TATGCACACACACATACATGTGCCCAATTCACATACATGCATGCATGCAC
ACAAACACACACATGCCCAAACACACACACACACAAAATCAGGAAATGCA
TATATGTGTGAATACCTATGTAATAAAATATCCCAACTTGGAATGTAATG
AAGCTACATTGACGGTGTTTATTGCACTTATCCATGCTGGCAAATTGAGC
CATCCAAGAAAGACTTTCAAGCTTAAAATCAACTTTTCAATATGTGAAAA
TCTAAACTGCATATAAAATTTCCTCAAGAAAATTATTTATATCCCATGGA
AATATATGGAAAAATAAGAATTATATGTTAGAAAAATGGCAAGAGATAAC
AAGGAATCATAGGTCCTTATCCTGTTGCTATGACAAAATAGATGACAAAT
ATAACTTCAGGGAGAAAGGGTTTGGTTTTTTTAGAAGTTCAAGTGTACAC
ACACACATGCATACAGACAGAAGGGGTGGGAGAGGGAGAGAGAGACAGAC
AAGGAGAGAGAGACAGACAAGGAGAGAGAGAGAGATAGAGAGAGAGACAG

Query= MSMg01no060_c17.g1 MSMg01no060_c17.g1 CHROMAT_FILE:
MSMg01no060_c17.g1 PHD_FILE: MSMg01no060_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:50 2005
         (590 letters)



>mm_chr1_124560328_124561317
          Length = 990

 Score = 1044 bits (540), Expect = 0.0
 Identities = 581/602 (96%), Gaps = 14/602 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtcattagatttgagtggttttggtacctctgtgataaaatgacttaatcaaaacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 atgtcattagatttgagtggttttggtacctctgtgataaaatgacttaatcaaaacatg 739

                                                                       
Query: 61  aactatacatgcacatatgcacacacacatacatgtgcccaattcacatacatgcatgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aactatacatgcacatatgcacacacacatacatgtgcccaattcacatacatgcatgca 679

                                                                       
Query: 121 tgcacacaaacacacacatgcc------caaacacacacacacacaaaatcaggaaatgc 174
           ||||||||||||||||||||||      |||||||||||||||||| |||||||||||| 
Sbjct: 678 tgcacacaaacacacacatgcccaaacacaaacacacacacacacacaatcaggaaatgg 619

                                                                       
Query: 175 atatatgtgtgaatacctatgtaataaaatatcccaacttggaatgtaatgaagctacat 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atatatgtgtgaatacctatgtaataaaatatcccaacttggaatgtaatgaagctacat 559

                                                                       
Query: 235 tgacggtgtttattgcacttatccatgctggcaaattgagccatccaagaaagactttca 294
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgacagtgtttattgcacttatccatgctggcaaattgagccatccaagaaagactttca 499

                                                                       
Query: 295 agcttaaaatcaacttttcaatatgtgaaaatctaaactgcatataaaatttcctcaaga 354
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 498 agcttaaaatcaacttttcaatatgtgaaaatctaaactgtatataaaatttcctcaaga 439

                                                                       
Query: 355 aaattatttatatcccatggaaatatatggaaaaataagaattatatgttagaaaaatgg 414
           |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 438 aaattacttatatcccatggaaatatatggaaaaataagaattatgtgttagaaaaatgg 379

                                                                       
Query: 415 caagagataacaaggaatcataggtccttatcctgttgctatgacaaaatagatgacaaa 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 caagagataacaaggaatcataggtccttatcctgttgctatgacaaaatagatgacaaa 319

                                                                       
Query: 475 tataacttcagggagaaagggtttgg------tttttttagaagttcaagtgtacacaca 528
           ||||||||||||||||||||||||||      |||||||||||||||||||||  |||||
Sbjct: 318 tataacttcagggagaaagggtttggtttttttttttttagaagttcaagtgt--acaca 261

                                                                       
Query: 529 cacatgcatacagacagaaggggtgggagagggagagagagacagacaaggagagagaga 588
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 260 cacatgcatacagacagaaggggagggagagggagagagagacagacaaggagagagaga 201

             
Query: 589 ca 590
           ||
Sbjct: 200 ca 199


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)