BAC Information

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BAC

Clone NameMSMg01-060E04
Chromosome1 (Build37)
Map Location 8,365,129 - 8,365,483
singlet/doubletsinglet
Overlap geneSntg1
Upstream geneLOC665063, LOC665069, LOC100039408
Downstream geneLOC100039474, LOC620444, EG665007, LOC665103, LOC100039464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060E04.T7 (MSMg01no060_e04.b1)MSMg01-060E04.TJ (MSMg01no060_e04.g1)
ACCAG286745AG286746
length740717
length of high quality
(start - end)
190 (72 - 261)499 (76 - 574)
definitionCHROMAT_FILE: MSMg01no060_e04.b1 PHD_FILE: MSMg01no060_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:57 2005CHROMAT_FILE: MSMg01no060_e04.g1 PHD_FILE: MSMg01no060_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAATATTTGCGGCGCTAAACGACTCCTACTGCCAGAGAATCCGCGGAATT
CTTTGTCTTCCTACACACACGATTTTTTAATGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGG
TCCCATTTGTTAACTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTT
CAGGAATTTTTCCCCTGTTTTTTTATCTTCCAGGCTTTTCCCCCCTTTCT
CCTCCATTTTTTTTTTTGCCCCTGCTCTTATGTGCAGCTCTTTGACCCAC
TCACACTTGACCTTACCCCCCGAAATAAAAAAGGATTGATTTCCTTTCTT
CTTTCCCCACTATCTCCTTCCGCTGTTCCGCCCCACTGCTCCCACTCTCT
CCTTTTTCTTCTTTGGATGTTTTTTATCCCCCCCGTTTCCCATTACTCCC
CCCTTTTTTTTCTTTCCCTTCTCTTTCCTTTTTCCCCCCCTTTTCCTCTT
TTCTTCCTTTTTTCCGCCCCTTTTCTCCTCTTTCTCTATTCCTCCCTTCT
CCCCCCCCTCCCCTTTTTCTCTTCATTTTTCCTCCTTTTTTCCGTTTCTC
CCTCTTCTCTCCCTTCCTTCCTTTCTCTTCTTCTCTCTTT
CCATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTGGCCTTTCAGCAGCTCAAACCT
ACTTCCTAGATTTTCCAAAGCTAAATATTTGCAAGTTTTGTAGGGAGAAA
TTAGGAACAAAATTATACATGTGTGTCTCTTGGTGCTACACCAAAACTTA
TTGAAAGCATATTTTATATACAAAACACTTCTTTTAAACTATAGTGTAGT
TTTTAATTCTTTTTGTTCTAGAGCTTTCTAGATGTGCCCCTAAGTTGCTA
TGAGAGGAATCCTCTAATTGTTTTATGTAGGAATTTAGTTCTATGAATTT
CCTCTTAGGACACTTTGTGTCCCATGATTTTGAATATGTTATGGATTCAT
TTCCATTAAAATCTGAAAGGTCTTTAATTTTGTTTTTATTTCTGTTATGA
ACTAATTTTCATTCAGCAACAATTTGTGCAATGTCCATGGGATTACAAGT
TTTCTGTTACTTTTGATATCTAGTTTTAATTTGTGATGGTCTGATAGGAT
GCAAGTAGTTATTTCACTTTTTGTATCTGTTGAGATTTTCTTTGTGTCTG
AGTATATCTTCAGTTTTGGACAAAGTTTCATTACGCGCTTACAAGAACGC
ATATTTGTTTATGATTGGCTCAAATGCTCTCTTACATCTTACCTCCCTTC
ACTTTATCTCCTCTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_e04.g1 MSMg01no060_e04.g1 CHROMAT_FILE:
MSMg01no060_e04.g1 PHD_FILE: MSMg01no060_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:57 2005
         (499 letters)



>mm_chr1_8365129_8366031
          Length = 903

 Score =  632 bits (327), Expect = 0.0
 Identities = 347/355 (97%), Gaps = 4/355 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actggcctttcagcagctcaaacctacttcctagattttccaaagctaaatatttgcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 actggcctttcagcagctcaaacctacttcctagattttccaaagctaaatatttgcaag 296

                                                                       
Query: 61  ttttgtagggagaaattaggaac-aaaattatacatgtgtgtctcttggtgctacaccaa 119
           ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttttgtagggagaaattagaaacaaaaattatacatgtgtgtctcttggtgctacaccaa 236

                                                                       
Query: 120 aacttattgaaagcata---ttttatatacaaaacacttcttttaaactatagtgtagtt 176
           |||||||||||||||||   ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 235 aacttattgaaagcatatttttttatatacaaaacacttctcttaaactatagtgtagtt 176

                                                                       
Query: 177 tttaattctttttgttctagagctttctagatgtgcccctaagttgctatgagaggaatc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tttaattctttttgttctagagctttctagatgtgcccctaagttgctatgagaggaatc 116

                                                                       
Query: 237 ctctaattgttttatgtaggaatttagttctatgaatttcctcttaggacactttgtgtc 296
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 115 ctctaattgttttatgtaggaatttagttctctgaatttcctcttaggacactttgtgtc 56

                                                                  
Query: 297 ccatgattttgaatatgttatggattcatttccattaaaatctgaaaggtcttta 351
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  ccatgattttgtatatgttatggattcatttccattaaaatctgaaaggtcttta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 903
Length adjustment: 10
Effective length of query: 489
Effective length of database: 893
Effective search space:   436677
Effective search space used:   436677
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)