BAC Information

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BAC

Clone NameMSMg01-060H09
Chromosome1 (Build37)
Map Location 177,938,659 - 177,938,969
singlet/doubletsinglet
Overlap genePld5
Upstream geneRgs7, Fh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, B020018G12Rik
Downstream geneCep170, Sdccag8, LOC666235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060H09.T7 (MSMg01no060_h09.b1)MSMg01-060H09.TJ (MSMg01no060_h09.g1)
ACCAG286899AG286900
length723734
length of high quality
(start - end)
367 (36 - 402)44 (87 - 130)
definitionCHROMAT_FILE: MSMg01no060_h09.b1 PHD_FILE: MSMg01no060_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:11 2005CHROMAT_FILE: MSMg01no060_h09.g1 PHD_FILE: MSMg01no060_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATGCGCGGAATTCAAAAAT
AGACCCACAGAGGTATGGCTAATTTCTTTTTAACATAAGCATAAAACAAC
TGACAATCAATAACTAGCAATACTGCTGTAGGAACTGGGTGTCTGTGGGC
TGGAGAGGTGACTTGGTGGTTCCGAGCTCTTGCTGCTCTTTCATGGTCAG
AGTTTGGCTCCTAGCACCCACATCAGGTGGATTGAAATCCCTTGTAAAAC
CAGCTCCCTGGGAGTCATCTCCCTCTTCTGGCCTCTACAGACACTGCAAC
CACAGGCACAACCCCTAACCTTACTGTACTGACAAACATGCACATACATA
GAATTTTAAAAATATTTTAAATTGGACGTCCATAAACAAACTTAAAACAG
ATTCGCCACCCATACCTTATAAAAGAAACAACTCAAATGGGATGTAGACC
TAAACACAAGGACTAAAATTATAAAAAAAAATTCCAGAATAAAATATAGA
AATATTTATAGCTAAATGAGAGGGAACTTTTTCTAAAAATATACAAATCA
GTATCTATGAAGGAAAAATGGCTCAAGTGGAATTGATTAATACCAAGAGC
ATTTGGTATAAACTGCTTTTAAGACCGAAATATAAACATATACCCATAAA
GAGTTTGTTCCCAGAGGATGCGAGAGTTGGAACATGAATGATACCTTTAA
CATTCGTTAAGAAAAAAATATTT
CTCTTCCTCCTTCGATGATAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGACTTAAACA
CTTCCCAGAGACTCATTCCTTCCTATTATTAATTAGGGTCCAATATGACT
TGGGGGGGGCATAGGCATTTAGAGTAGTGCACTGTTAAAGTCAGTCGTCC
TTGGCCTGGAGAGATTATTTTTATGATTCCTTTAAGTGGAACACTCCCCA
GATACTCGCGACTCATAGAGCTTGTCTCTATTAATAGCGGTCAGAAAGCA
CTGCTGCCTTTGTAAGTAAGCCACATCCTTCGTCTAATATATGCTGCCAC
ACTCTCCACCGGCATGCCCTCTAATCTTCTAAACCTTGCCTTATAAAATG
ATTATGACTTTTCCGCGGAGAAAACATCCCACCCCACACTTATACCCTGT
TCACTGGACAGGCCCTCATAACCCTTATGATAGCTCAGGTTCCGTGTTTT
ACGCTCACATTATCCGGTACGGCTATTTCACTCGCCCACCGACCCTTCGA
ATAACTACGATCACTTGCTGAGGGCCGGATCCGCCATTCCCCTTTATCCA
TGTTGCCCTGTTACCATGGTGCCCATTTTTCCCTTAATCTCCCCCGACCT
TGCTTTCCTCTGTTTCAAAAGGCCCCCTGCCACCCATACGTCTCCCCCGA
CCTACTCCTGCCTTCTTTCCAATTGTCCTATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_h09.b1 MSMg01no060_h09.b1 CHROMAT_FILE:
MSMg01no060_h09.b1 PHD_FILE: MSMg01no060_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:11 2005
         (367 letters)



>mm_chr1_177938659_177939425
          Length = 767

 Score =  582 bits (301), Expect = e-170
 Identities = 308/311 (99%), Gaps = 2/311 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcaaaaatagacccacagaggtatggctaatttctttttaacataagcataaaaca 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaattcaaaaatagacctacagaggtatggctaatttctttttaacataagcataaaaca 252

                                                                       
Query: 64  actgacaatcaataactagcaatactgctgtaggaactgggtgtctgtgggctggagagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 actgacaatcaataactagcaatactgctgtaggaactgggtgtctgtgggctggagagg 192

                                                                       
Query: 124 tgacttggtggttccgagctcttgctgctctttcatggtcagagtttggctcctagcacc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tgacttggtggttccgagctcttgctgctctttcatggtcagagtttggctcctagcacc 132

                                                                       
Query: 184 cacatcaggtggattgaaatcccttgtaaaaccagctccctgggagtcatctccctcttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 cacatcaggtggattgaaatcccttgtaaaaccagctccctgggagtcatctccctcttc 72

                                                                       
Query: 244 tggcctctacagacactgcaaccacaggcacaacccctaacctta--ctgtactgacaaa 301
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 71  tggcctctacagacactgcaaccacaggcacaacccctaaccttactctgtactgacaaa 12

                      
Query: 302 catgcacatac 312
           |||||||||||
Sbjct: 11  catgcacatac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)