Query= MSMg01no061_c13.b1 MSMg01no061_c13.b1 CHROMAT_FILE:
MSMg01no061_c13.b1 PHD_FILE: MSMg01no061_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:04 2005
(396 letters)
>mm_chr1_55822570_55823366
Length = 797
Score = 692 bits (358), Expect = 0.0
Identities = 387/402 (96%), Gaps = 11/402 (2%)
Strand = Plus / Minus
Query: 1 tacctgtgggcttaggagatgtcctgtgcttccttcatcgtgacattaaaattccacttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tacctgtgggcttaggagatgtcctgtgcttccttcatcgtgacattaaaattccacttt 538
Query: 61 cactgtccatgatgaaacatttgtgacactcaccttcccttctccacaggcttgtgagat 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 cactgtcaatgatgaaacatttgtgacactcaccttcccttctccacaggcttgtgagat 478
Query: 121 gtgtgttgttatgactcttactttacagattccaaactccaatgtctagtatatccagga 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gtgtgttgttataactcttactttacagattccaaactccaatgtctagtatatccagga 418
Query: 181 tgtaggagagaacctaaggaaagcaatctcgagcctgtgttctttgcatgccactgtatc 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tgtaggagagaacctaaggaacgcaatctcgagcctgtgttctttgcatgccactgtatc 358
Query: 241 --ctctcatctttattaatttactttgtcaagaagatgtgcatcaattgctttttctagc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ctctctcatctttattaatttactttgtcaagaagatgtgcatcaattgctttttctagc 298
Query: 299 tttctgtattccataccaactatacactggtcagagaataactctaa----ccccccaca 354
||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 297 tttctgtattccataccaactatacactggtcagagaataactctaatttg-----ctca 243
Query: 355 gcaccaactttccagacctattctaatgcttcttgaatcggg 396
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gcaccaactttccagacctattctaatgcttcttgaatcggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 797
Length adjustment: 9
Effective length of query: 387
Effective length of database: 788
Effective search space: 304956
Effective search space used: 304956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_c13.g1 MSMg01no061_c13.g1 CHROMAT_FILE:
MSMg01no061_c13.g1 PHD_FILE: MSMg01no061_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:04 2005
(300 letters)
>mm_chr1_55738188_55738887
Length = 700
Score = 565 bits (292), Expect = e-165
Identities = 298/300 (99%)
Strand = Plus / Plus
Query: 1 ttcattacggctttccgttttaatcctttgtgagtttccctggtagcactgctaatcgag 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcattacagctttccgttttaatcctttgtgagtttccctggtagcactgctaatcgag 260
Query: 61 tttaactatgttgaagtgtcaagcctctttctctaagagattaattacagatccgtctcc 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tttaactatgttgaagtgtcaagcctctttctctaagagattaattagagatccgtctcc 320
Query: 121 aagctaattgtaaattactgtactttttcattgttaagtgtttagtggaaatgttgttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagctaattgtaaattactgtactttttcattgttaagtgtttagtggaaatgttgttta 380
Query: 181 ggaaaatgattatagattataaatagtttcattaagtatttcatttctctgtctctttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaaatgattatagattataaatagtttcattaagtatttcatttctctgtctctttcc 440
Query: 241 caggtctatagtaataaatgactttaatattcttttcactgataatttaaatgagctcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggtctatagtaataaatgactttaatattcttttcactgataatttaaatgagctcta 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space: 201081
Effective search space used: 201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
