BAC Information

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BAC

Clone NameMSMg01-061E18
Chromosome1 (Build37)
Map Location 151,198,583 - 151,198,932
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042792, LOC435647
Downstream geneLOC100042813, Pla2g4a, Ptgs2, LOC676712, LOC100043257, LOC100043261, Pdc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061E18.T7 (MSMg01no061_e18.b1)MSMg01-061E18.TJ (MSMg01no061_e18.g1)
ACCAG287539AG287540
length727719
length of high quality
(start - end)
356 (38 - 393)477 (69 - 545)
definitionCHROMAT_FILE: MSMg01no061_e18.b1 PHD_FILE: MSMg01no061_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:13 2005CHROMAT_FILE: MSMg01no061_e18.g1 PHD_FILE: MSMg01no061_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
TCAGATCGCCGGTAGAAGTCATCCATTCTTTCCATTCATTATCTTATTTA
TGTTATGCAGCTTGAAATATGATTAATATTATCAAGTCTAAAATGTGGAT
TTTGTGGTTTTTGGATAATAAGGCCATATCCTGTCAGACCAGCAGTCAGA
AAGTTTATACCAAACTGAATAATTTCATCCTCTGCCTTAGACAAAAATAT
CCAGCTTAGGGTACCACCTACAGAGGAGCTTAAGGAGGATTTGCTGGAAC
ACTGTGAGCTTTTCAAGCCTTTTTAATGGGTAGCTCAAATGCCATTCTAG
TACAGACCATATGTATTTCTAATAATGGTAGCCAGTTCCTCTCTAATTGG
CTGATTAGATTGCCCGAGGACACATGTGTCAGTCCAGGTCGCACAACGCT
TGTTCTTGCATCAGTTGGAAAGCTAAGTCTGCAGGCTCATTAAATAATTT
TCATACTTTTCTTCACAAAAACAAAGATCCTGCACTAGAAATTGCACCTT
GTATGTATTTTGTCCCTATTTTTCTTATCCCCACCATTTCATGTCTTATC
TCCTCTGACCGGACTATGTCTGCCCCTTTTTCCCTCGAATGCCCACTTTG
ATAATTTCCCTTAAGCTTTTAATTGTTGCCCTGTTCTTTCCCCTATTTCC
CTTTAATTCTGTCCCAGATATACGCCG
TAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATAGACGCATTATTGAAAAGAACTGAACATGG
GGTCCAAAATGTAGGAGCTAAAGAATGGACCCAAGGAGCTGAAGAAGTTT
TCAGCCTCATAGTAGGAACAACTATATGAATGAATCAGTACCCCCAGATC
TCCCAGGGACTAAACTACCAAACAAAGAGTACACATGGAGGGATCCATGG
CTCCAGCTGCATATGTAAGAGAGGATGGCCTTATCAGATATCAATGAGAG
GAGAGGCCCTTGATCCTTGATCCCTTGAAAGCTCAATATCCCATTGTACA
GGAATTCCAGGGTGGGGAGGCAGGAGTGTGTGGGTGGGGAACATCCTCAT
TGAAGCAGGGGGAGGGCAAATAGGATAGGGGTTTTCTGGAGGGGAAACCA
GGAAAGGGTATAACATTGAAATGTAAATAAAGAAAATATTCAATAAAAGA
GAAAATATGAAAAAGAGAAAAGGAAGATAGGATGAATAGATCACCAAATG
CTACAGTATAGGTGAAAATTGGTAGGTACAGTGCTTGAATACATGCAACT
TAAGAAGATAAACAGGTAGGGTAATCTGAACATTCGATATTAGGATGTAG
AGAAAACAGTACAGCAATTAACTGGACCATTTCAGCTCCCTCTAGAAATA
GCAACCATCCCCTATACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_e18.b1 MSMg01no061_e18.b1 CHROMAT_FILE:
MSMg01no061_e18.b1 PHD_FILE: MSMg01no061_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:13 2005
         (356 letters)



>mm_chr1_151198379_151199132
          Length = 754

 Score =  658 bits (340), Expect = 0.0
 Identities = 349/352 (99%), Gaps = 2/352 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttcagatcgccggtagaagtcatccattctttccattcattatcttatttat 64
           ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttcagat-gt-ggtagaagtcatccattctttccattcattatcttatttat 262

                                                                       
Query: 65  gttatgcagcttgaaatatgattaatattatcaagtctaaaatgtggattttgtggtttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gttatgcagcttgaaatatgattaatattatcaagtctaaaatgtggattttgtggtttt 322

                                                                       
Query: 125 tggataataaggccatatcctgtcagaccagcagtcagaaagtttataccaaactgaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tggataataaggccatatcctgtcagaccagcagtcagaaagtttataccaaactgaata 382

                                                                       
Query: 185 atttcatcctctgccttagacaaaaatatccagcttagggtaccacctacagaggagctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atttcatcctctgccttagacaaaaatatccagcttagggtaccacctacagaggagctt 442

                                                                       
Query: 245 aaggaggatttgctggaacactgtgagcttttcaagcctttttaatgggtagctcaaatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaggaggatttgctggaacactgtgagcttttcaagcctttttaatgggtagctcaaatg 502

                                                               
Query: 305 ccattctagtacagaccatatgtatttctaataatggtagccagttcctctc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ccattctagtacagaccatatgtatttctaataatggtagccagttcctctc 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 754
Length adjustment: 9
Effective length of query: 347
Effective length of database: 745
Effective search space:   258515
Effective search space used:   258515
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)