BAC Information

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BAC

Clone NameMSMg01-061G15
Chromosome1 (Build37)
Map Location 155,142,925 - 155,143,352
singlet/doubletsinglet
Overlap geneLamc1
Upstream gene5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2
Downstream geneEG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061G15.T7 (MSMg01no061_g15.b1)MSMg01-061G15.TJ (MSMg01no061_g15.g1)
ACCAG287629AG287630
length709709
length of high quality
(start - end)
428 (72 - 499)339 (75 - 413)
definitionCHROMAT_FILE: MSMg01no061_g15.b1 PHD_FILE: MSMg01no061_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:22 2005CHROMAT_FILE: MSMg01no061_g15.g1 PHD_FILE: MSMg01no061_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCAAGAGAATCCGCG
GAATTCATTTGATTTCCCAAATTGACTAAACTCTTTATAGTGATCCAGTC
GCCTTGATGAAACACTCCTGCCTGTTTCTACCTTGCTTGTTTTTGTAATG
TGCTGCTGCAGAAACAATATATAGGAGACTTACAAGATACTGCAATGTAC
TGTCTACAGCAATGCAAGGAAAGTCGTGGAGTGGCACAGCCCGGACTGAA
AACAACTGCAGACTTACTTGTGCTCTGCGGAGCAATAGTAAAGGCCAGAC
ATTCCCATCTTTTGAGCAGAATCTCACAATCCCACTTACACGGTGAGCAT
CACAATCCCACTTACACGGTGAGCCTCACAAAGCCTCCTTCAATGTGCTC
ACCTTCCTGGGTGGCTCCCCCCACACAAAAGACCTCCTGCTGTTCTTCAT
GCTTAAGAAGTTATTATTTGAAATGTGCTGATTCGGGTATTTCTGAAGAG
GCTTGGGTTTTTAAAACGCTTTGGTGGCTAAAGTCTATGAATTACCTGTC
TCTGAAATGAAACATATGCATGAACCTGCCTTCTTGCTGAACAAGCTCGT
CTTATGATGCTAAGGACTGGAGAAAAGTCATTGAGCTCAACCTGTGAAAC
AAGCTGAGTCGACTCTTCTGAAACTCAGCGAAAACTTGGTAGCTCGTTTG
CTTTTTTAT
GAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAAGATGGCCACACACAGCAGGCAG
AAGCCTCCATGCTGTAATTCCAGCATTCTGGAGGCTGAAGCAGAGCTAGC
CTGGGCTGCAAGACTCTGCCTTAAAAATAACAAAACCAGGGGCTAGAGAG
ATGGCTCAGTGGTCCTGAGTTCAAATGTCAGCAACCATGTGATCTGATGC
CCTCTTCTGGTGTGTCTGAAGACAGCTACAATAAATAAATAAATAAATAA
ATAAATAAATAAATAAATAAATAATTAAATAAATAAATAAACAAAACCAA
AAAGACAGGCACAGAAAGGACCATTACACTTACGAGAAAGGTGTGGGTAC
AGTCATTTGGTAATGCAACGCACTCTCCAAGGTGGAGAAGGTTCACCTTG
GCACACCCCCTTCAACAGGGTCACAGGAAGAGGCCCAGGATACCCTCGAA
TTCACCATCCTCCTCTCCACTCCCTCGGGTACTGGATTGCAGGTAGCACC
ACAACCTTCAGCCCAGAAGGACTTTTCCTGTGGCAATGTTCCTGAAATCA
AAGTCTCCTTACAAGGAAGACACAAGTCTGCAGGTCACTGGGGGCAATGC
TCCAGTGCGTGTGAAGGTGATGGCGACTATTCTCATTAATCCTGACAATA
ATACTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_g15.b1 MSMg01no061_g15.b1 CHROMAT_FILE:
MSMg01no061_g15.b1 PHD_FILE: MSMg01no061_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:22 2005
         (428 letters)



>mm_chr1_155142725_155143552
          Length = 828

 Score =  804 bits (416), Expect = 0.0
 Identities = 425/428 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgactaaactctttatagtgatccagtcgccttgatgaaacactcctgcctgtttctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgactaaactctttatagtgatccagtcgccttgatgaaacactcctgcctgtttctac 260

                                                                       
Query: 61  cttgcttgtttttgtaatgtgctgctgcagaaacaatatataggagacttacaagatact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgcttgtttttgtaatgtgctgctgcagaaacaatatataggagacttacaagatact 320

                                                                       
Query: 121 gcaatgtactgtctacagcaatgcaaggaaagtcgtggagtggcacagcccggactgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaatgtactgtctacagcaatgcaaggaaagtcgtggagtggcacagcccggactgaaa 380

                                                                       
Query: 181 acaactgcagacttacttgtgctctgcggagcaatagtaaaggccagacattcccatctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaactgcagacttacttgtgctctgcggagcaatagtaaaggccagacattcccatctt 440

                                                                       
Query: 241 ttgagcagaatctcacaatcccacttacacggtgagcatcacaatcccacttacacggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgagcagaatctcacaatcccacttacacggtgagcatcacaatcccacttacacggtg 500

                                                                       
Query: 301 agcctcacaaagcctccttcaatgtgctcaccttcctgggtggctccccccacacaaaag 360
           |||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct: 501 agcctcacaaagcctccttcaatgtgctcaccttcctgggtggctctcctcagacaaaag 560

                                                                       
Query: 361 acctcctgctgttcttcatgcttaagaagttattatttgaaatgtgctgattcgggtatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acctcctgctgttcttcatgcttaagaagttattatttgaaatgtgctgattcgggtatt 620

                   
Query: 421 tctgaaga 428
           ||||||||
Sbjct: 621 tctgaaga 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)