BAC Information

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BAC

Clone NameMSMg01-061P17
Chromosome1 (Build37)
Map Location 54,172,041 - 54,172,327
singlet/doubletsinglet
Overlap geneHecw2
Upstream gene1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
Downstream gene4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44, Sf3b1, Coq10b, Hspd1, Hspe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061P17.T7 (MSMg01no061_p17.b1)MSMg01-061P17.TJ (MSMg01no061_p17.g1)
ACCAG288063AG288064
length777733
length of high quality
(start - end)
290 (46 - 335)241 (73 - 313)
definitionCHROMAT_FILE: MSMg01no061_p17.b1 PHD_FILE: MSMg01no061_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:06 2005CHROMAT_FILE: MSMg01no061_p17.g1 PHD_FILE: MSMg01no061_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCTGTTAAACTATTTAAAATTTTTGGAGAATTTCTGGTTTTTAA
AGATGCTTTTCTAAATTCTTTCAAATGTATTGGTCTATGCAATATTTTTA
ACTTTGAGGTTCTTTTTTTATTAAAAAATTAAGTTGTAATGGCATATACA
CACAAATAATGACTTTAAAGTTATTTTAAGTTTGTTTGTTATTGTTGTTG
TTAGTGAGTGTGTGTGTGTCTATTGGGTGACACAGTGCATGTGGAGGTCA
GAAGATAACTTCAGAAGTTTTTTTTTTCTCTTTCCACGCCGACACCTAAA
CTCAGATGTGTATGGCCACCGTAGTCCCCCGTTGCACCATCTCACTGACC
CTGACAGTTCATCCACACCCCCTATACCGTGGCCACCGTCATGCCCTCCC
CGCTATCCTCCTTTTATCCCTTACAATCCCCCCCCCCCTCCTCCTTTTTT
CCCCTCCCCCCCCCATTTACCCCCTTCCTCACTTTTCTTCTCTCCTCCCC
CCATTTTTAGTTTTCACCACTCCCCCCCCTCTTCTCACTCCTTTTCTCCC
TCTACACTCACACTTTATACCCCCCTCCACCTTCCCTATCCCCTCTTCCT
TCCTCTCTCAACATCTCACGCTTCCCCTCTTCTATCGCCCCACTCCTTTA
TTCCCCCCCCTCCAAACCCCCCACATTATATATCCCCCACTAACCTACCC
CACCCCCTCCCCCCTGCCTCCACCCCG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCATTTTGGTTCCCTGAACTGTAGAGTG
AGGGCTATTATGGTTGGAAAGGCCAAATGGAAGCCTTTAGAGTTGCCTCT
GCCAAAGAAAATAGTGAATCAAAAACAGTATCGTATTCCTGGAGGAATTG
CAGAAATTACTGGCACTATCAAGGACTTGAAAGATGCAGGGGTGTTGGTT
CCCACCACATCTCCATTTAACTCTCCTATCTGGCCAGTGCAGAAAACAGA
TGGATCATGGAGAATGACAGTTTATTTTTGAAAACTAAATCAGGTAGTAA
CTCCAATTGCAGCTGCTGTACCAGATGTAGTTTCCTTACTTGAGCAAATT
AACACATCTCCTGCCACCTGGTATGCGGCTATTGATCTGGCAAATGCCTT
CTTCTCAGTACCTGTCCATAAGGACCACCATAAGCAATTTGCTTTCAGTT
GGCAAGGCCAACAGTATACCTTCACAGTTTTGCCTCAAGGATATATTATC
TCTCCTGCCCTGTGTCATATTTTAGTTAGAAGGGATCTTGATCGTTTGGA
TTTTCCACATAAAATCTCTTAGTTGCAATATATTGATGACATTATGCTGA
TTTGCTACCTTGTGGATTTGTATATACATTTCCCTTTTATATCTCATTGC
ATTATTACACATGTCTTACCATGAAGTATGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_p17.b1 MSMg01no061_p17.b1 CHROMAT_FILE:
MSMg01no061_p17.b1 PHD_FILE: MSMg01no061_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:06 2005
         (290 letters)



>mm_chr1_54171916_54172605
          Length = 690

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatctgttaaactatttaaaatttttggagaatttctggtttttaaagatgctt 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ggaattcatctgtaaaactatttaaaatttttggagaatttctggtttttaaagatgctt 353

                                                                       
Query: 64  ttctaaattctttcaaatgtattggtctatgcaatatttttaactttgaggttctttttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttctaaattctttcaaatgtattggtctatgcaatatttttaactttgaggttctttttt 293

                                                                       
Query: 124 tattaaaaaattaagttgtaatggcatatacacacaaataatgactttaaagttatttta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tattaaaaaattaagttgtaatggcatatacacacaaataatgactttaaagttatttta 233

                                                                       
Query: 184 agtttgtttgttattgttgttgttagtgagtgtgtgtgtgtctattgggtgacacagtgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 agtttgtttgttattgttgttgttagtgagtgtgtgtgtgtctattgggtgacacagtgc 173

                                                          
Query: 244 atgtggaggtcagaagataacttcagaag-ttttttttttctctttc 289
           ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 172 atgtggaggtcagaagataacttcagaagtttttttttttctctttc 126


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)