TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGCTGTGCAAAAACCATTTAGTTTAATGCAGCTTGATTTATCAC
TTTTTGCCTTTGTTGTCTGTATTTTGAGGATTATATATAAAAATGTTTAC
ACAGGCCCACAGCCACAAGAATTTAAGTCTTTTTATTTGTATATTCCTGG
CTGGTCAGAATGCTTGGGAAACTTTTCTTAAATAGCATGTGCACAGAAGC
TAGGCTGGCCCCACTGGGTCCTGCTGCCAGCTGACCAACTCAGGTACCAT
ATGGGCTCTGATCCAGGGCTTTAAGTTGGTCCACCCCAACATCCAAACCA
TCTGCAAGCTGCTGGAGTACATGAAGGAGTCGGCTCTGCAAAGCCAGAGC
TGCAGGACTCTGGCAGCTGCAGAATATCCACAACAAGTCTCAATAATGGT
CCAGTATTCATGGTGCTTCAGAGGGCAGGAACCAGACCAGCGAGTCATCA
CCATGAACATTTGCAATGCAAAGCTATCTGGGCAAAAAGAATACTTATAT
AGTGACACAGACACACACGCTGAGGTTTCCAATGCCACTACAATAAATGA
ATATTCTGTGAAGAGGTGGGAAAGTGAGAGGAATGAAGTGGTGAGCAGTG
CAGAAAGGCTGAACTAGAGATGCAACTGCGGTGATAGATGTGAGAAAAGC
CCTTCATGCACAGGCAAGCACGTTGTTGC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGGTAAATAAAACTCCTAAATGAAA
ATAGCCTAGATGTTTATCGACTGAAGAATAGATAATGAAATGGCTTTTTA
TTTACCCAATGGCATAGTGTTCAGCTCTAAAGTAAAATAAAACTTTGAAA
TTTGCAGGACAATGATTGGCACTAGAAACAATCACCCTGAGGGAGGAATG
CAGACCAAGAAAGGCAAACACTGCATTTCTCTTAAATGCCAGTGTTAGCT
TCAGTCATGTGTGCTTCATTCAGAAAATCCACAGAAGTTAGGTGTCGAAT
AAGGGACCAGGAAAGAAGAGGAGGTTTAAAGGAAGGGAAAGCAGAGTGTT
GTAAAGGGATAAACAGGAAACTATATTAGGATTAAGTGGGGGTGGTAGGT
GGGGGCTCTCCTCTTTTTTCTCCTCCTCTCCTCCTTTCCTTCCTCTCTTT
TTCTTTTTTCTATCCTTTTTCTTTTTTTTTTTATTTTCACACTCACCAAT
TATATAATTAATATAATTTTTCAAATTTCTTCTCTTTCTTTATTTTTCTT
GTTCAATCTTATTCTACTCTTTTCCTCTACTACACTCCCTAATCTCTACT
TTTTTATTATCCTCTTTAACCACGAGACATTCTACTTCTTTATATGTTAT
TACATTTTACAATTAAATCACTTCGAGTCTCCATTATCTCCTCCTTAATT
CATCGGATAAAAATATAATTACCTCTAAATTACATCCCATAN

Query= MSMg01no061_p23.b1 MSMg01no061_p23.b1 CHROMAT_FILE:
MSMg01no061_p23.b1 PHD_FILE: MSMg01no061_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:07 2005
         (539 letters)



>mm_chr1_132165163_132166101
          Length = 939

 Score =  932 bits (482), Expect = 0.0
 Identities = 523/544 (96%), Gaps = 14/544 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctctgctgtgcaaaaaccatttagtttaatgcagcttgatttatcactttttgcc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctctgctgtgtaaaaaccatttagtttaatgcagcttgatttatcactttttgcc 262

                                                                       
Query: 64  tttgttgtctgtattttgaggattatatata-aaaatgtttacacaggcccacagccaca 122
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 263 tttgttgtctgtattttgaggattatatatataaaatgtttacacaggcccacagccaca 322

                                                                       
Query: 123 agaatttaagtctttttatttgtatattcctggctggtcagaatgcttgggaaacttttc 182
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 323 agaatttaagtctttttatttgtatattccaggctggtcagaatgcttgggaaacttttc 382

                                                                       
Query: 183 ttaaatagcatgtgcacagaagctaggctggccccactgggtcctgctgccagctgacca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttaaatagcatgtgcacagaagctaggctggccccactgggtcctgctgccagctgacca 442

                                                                       
Query: 243 actcaggtaccatatgggctctgatccagggctttaagttggtccaccccaacatccaaa 302
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 443 actcaggtaccatatgggctctgatccagggctttaagttggtccacctcaacatccaaa 502

                                                                       
Query: 303 ccatctgcaagctgctggagtacatgaaggagtcggctctgcaaagccagagctgcagga 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ccatctgcaagctgctggagtacatgaaggagtcggctctgcaaagccagagctgcagga 562

                                                                       
Query: 363 ctctggcagctgcagaatatccacaacaagtctcaataatggtccagtattcatggtgct 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctctggcagctgcagaatatccacaacaagtctcaataatggtccagtattcatggtgct 622

                                                                       
Query: 423 tcagagggcag-------gaaccagaccagcgagtcatcaccatgaacatttgcaatgca 475
           |||||||||||       |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 623 tcagagggcagaaacctcgaaccagatcagcgagtcatcaccatgaacatttgcaatgca 682

                                                                       
Query: 476 aagctatctgggcaaaaagaatacttatatagtgacacagacacacacgctgaggtttcc 535
           ||||||||||||||||||||||||||||| ||||| |||      ||||||||| |||||
Sbjct: 683 aagctatctgggcaaaaagaatacttatacagtgataca------cacgctgagatttcc 736

               
Query: 536 aatg 539
           ||||
Sbjct: 737 aatg 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)