Query= MSMg01no062_b17.b1 MSMg01no062_b17.b1 CHROMAT_FILE:
MSMg01no062_b17.b1 PHD_FILE: MSMg01no062_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:21 2005
(629 letters)
>mm_chr1_172276637_172277664
Length = 1028
Score = 1178 bits (609), Expect = 0.0
Identities = 624/633 (98%), Gaps = 9/633 (1%)
Strand = Plus / Plus
Query: 1 ggacttgccttggggcagtaggaactccatgcggtgcctaactccatttgaggtagaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggacttgccttggggcagtaggaactccatgcggtgcctaactccatttgaggtagaggc 260
Query: 61 cattctcactctggtttggtagcaggtcacaccagcctgcctgtgccatcagactagatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattctcactctggtttggtagcaggtcacaccagcctgcctgtgccatcagactagatc 320
Query: 121 ccacagcaaggcaagcagagccccagggtctccttgacctacgcttcttgtttaaaatgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacagcaaggcaagcagagccccagggtctccttgacctacgcttcttgtttaaaatgc 380
Query: 181 ctttgttctacatgtttccttgggtctagcctctgccctcctaggagaaccttgaagtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgttctacatgtttccttgggtctagcctctgccctcctaggagaaccttgaagtca 440
Query: 241 cgtagggtgactatccatttact----tttttacaaaatgaggatgcacatctttgtttt 296
||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 441 cgtagggtgactatccatttactaacat----acaaaatgaggatgcacatctttgtttt 496
Query: 297 gtgttggcttttcttacgtacacattaatgaaatgaacaatggatgcacttggtaaatga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtgttggcttttcttacgtacacattaatgaaatgaacaatggatgcacttggtaaatga 556
Query: 357 ctgtgtgttgttcatctctcaaattggacattactgcaaaaggcaagaactccagagggg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctgtgtgttgttcatctctcaaattggacattactgcaaaaggcaagaactccagagggg 616
Query: 417 aatttcactcttgggtggcaggccagacaacactgcagatagtccaagttacaaccttca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aatttcactcttgggtggcaggccagacaacactgcagatagtccaagttacaaccttca 676
Query: 477 gggacactttgaattcccctctccttttcagagcctctccttttcagatgtaggccttac 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gggacactttgaattcccctctccttttcagagcctctccttttcagatgtaggccttac 736
Query: 537 gcgtgtgcatcttcagtgactagggctgatttgtctctccttcctgccccagtccccatc 596
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 737 gcgtgtgcatcttcagtgactagggctgatt-gtctctccttcctgccccagtccccatc 795
Query: 597 agtccgctcatatagccaactatggtttccctt 629
|||||||||||||||||||||||||||||||||
Sbjct: 796 agtccgctcatatagccaactatggtttccctt 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1028
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1018
Effective search space: 630142
Effective search space used: 630142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_b17.g1 MSMg01no062_b17.g1 CHROMAT_FILE:
MSMg01no062_b17.g1 PHD_FILE: MSMg01no062_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:21 2005
(487 letters)
>mm_chr1_172437505_172438391
Length = 887
Score = 903 bits (467), Expect = 0.0
Identities = 482/487 (98%)
Strand = Plus / Minus
Query: 1 cttctgtagagtctagacagaaggaagtaacccggagtggagctagcacctgcgtggtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 cttctgtagagtctagacagaaggaagtaacccggagtggagctagcacctgcgtggtat 628
Query: 61 gcaggctgcatggaggactggcaacagacatgctcctggcatctccatttgggttgcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gcaggctgcatggaggactggcaacagacatgctcctggcatctccatttgggttgcttg 568
Query: 121 cagaaagagtttggctttgctgcttttagtatcttttctgacttgttggtacctgtgctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cagaaagagtttggctttgctgcttttagtatcttttctgacttgttggtacctgtgctg 508
Query: 181 ggtacaaaatatgaggccagtgatgggccataggaatgacagtacaaagacccagctagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggtacaaaatatgaggccagtgatgggccataggaatgacagtacaaagacccagctagg 448
Query: 241 acttagctatcaaccattgacaatatttatccaccttcacacactgcaccccagcactga 300
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 447 acttagctatcaaccattgacaatacagagccaccttcacacactgcaccccagcactga 388
Query: 301 ctgtggccctggtggtggacgttctgagtatcactactgattctgcttgggctgggcacc 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctgtggtcctggtggtggacgttctgagtatcactactgattctgcttgggctgggcacc 328
Query: 361 ggagagctcggataacatatccactgtgtattcacagagaggtgatttcagtgtgaagtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggagagctcggataacatatccactgtgtattcacagagaggtgatttcagtgtgaagtc 268
Query: 421 tgacttgtttgaatttattggttatataatataacttgtgtttaaattataaatctatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgacttgtttgaatttattggttatataatataacttgtgtttaaattataaatctatat 208
Query: 481 aaggcct 487
|||||||
Sbjct: 207 aaggcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
