Query= MSMg01no062_c01.b1 MSMg01no062_c01.b1 CHROMAT_FILE:
MSMg01no062_c01.b1 PHD_FILE: MSMg01no062_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:23 2005
(781 letters)
>mm_chr1_149113775_149114955
Length = 1181
Score = 632 bits (327), Expect = 0.0
Identities = 367/393 (93%), Gaps = 20/393 (5%)
Strand = Plus / Plus
Query: 1 tatatctatcagaatttaaaattttttaatcaccccgatttatttttgtggttgcaagtg 60
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 201 tatatctatcagaatttaaaattttttaatcacagtgatttatttttgtggttgtaagtg 260
Query: 61 tataacttgctggagtcagtcctcttctattgcaatgtgagttttgaggaaggaagtcag 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tataacttgctggagtcagttctcttctattgcaatgtgagttttgaggaaggaagtcag 320
Query: 121 ttattgcttttcccactcaattatcttgctggcctcaacttcatttgttttaataatttt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 ttattgcttttcccactcaattatcttgctggcctcaacttcatttgttttaatcatttt 380
Query: 181 tcctctttttgagtagaaatgatcaatacaatgcttgcttcatgctcagtgtgcatacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctctttttgagtagaaatgatcaatacaatgcttgcttcatgctcagtgtgcatacta 440
Query: 241 ctactaacctacccacccagctcctattcactggcattattatgattaaaagactagtta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctactaacctacccacccagctcctattcactggcattattatgattaaaagactagtta 500
Query: 301 aagcacaatcaatcaatcaatcaatcaatcaatatttatttatttatttatttatttatt 360
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 aagcacaatcaatcaatcaatcaat--------------------atttatttatttatt 540
Query: 361 tatttatttatttatttatattacaaaaggggt 393
|||||||||||||||||||||||||||||||||
Sbjct: 541 tatttatttatttatttatattacaaaaggggt 573
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 781
Length of database: 1181
Length adjustment: 10
Effective length of query: 771
Effective length of database: 1171
Effective search space: 902841
Effective search space used: 902841
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_c01.g1 MSMg01no062_c01.g1 CHROMAT_FILE:
MSMg01no062_c01.g1 PHD_FILE: MSMg01no062_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:24 2005
(765 letters)
>mm_chr1_149204657_149205821
Length = 1165
Score = 949 bits (491), Expect = 0.0
Identities = 603/693 (87%), Gaps = 84/693 (12%)
Strand = Plus / Minus
Query: 18 tgactttcagtttagtatttttatcctactccagaatatgtgaattagtggatctctgat 77
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1165 tgactttcagtttagtatttttatgggactccagaatatgtgaattagtggatctctgat 1106
Query: 78 gtttgtgccttcccacgtgctcttttccttcagttggtttgccttgtacaaacaccaatt 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1105 gtttgtgccttcccacgtgctcttttccttcagttggtttgccttgtacaaacacaaatt 1046
Query: 138 aatgtcttcttttttatatactatttttaaattatgttttattgttaaaaataaaattga 197
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 aatgtcttctcttttatatactatttttaaattatgttttattgttaaaaataaaattga 986
Query: 198 aacaaaaattttaagtaaaagagtattaattaaaaattgggcacacaattttgtcttata 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 aacaaaaattttaagtaaaagagtattaattaaaaattgggcacacaattttgtcttata 926
Query: 258 caccatcttaaatttgaaataatatttattaagtgcaataaattatatatatatgtatat 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 caccatcttaaatttgaaataatatttattaagtgcaataaattatatatatatgtatat 866
Query: 318 atatacatatatatatatatacatatatacacacacacacatatatatatatacatacac 377
||||||||||||||||||||||||||||| ||||||
Sbjct: 865 atatacatatatatatatatacatatata--------------------tataca----- 831
Query: 378 acacacacacacacatatatatatatatatacatatatatatatatatatatatatatat 437
||||||||||||||||||||
Sbjct: 830 -----cacacacacatatatatata----------------------------------- 811
Query: 438 atacatataatacagtattaaagaacaccaaaaatatctatttaaaaaactgaggttcta 497
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ---------atacagtattaaagaacaccaaaaatatctatttaaaaaactgaggttcta 760
Query: 498 tggggatgttaaattttcattgaatgaaaagctaataaattttacttgaaaattatctag 557
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 759 tggggatgttaaattttcattgaatgaaaagctaatgaattttacttgaaaattatctag 700
Query: 558 cagtaaagagcatacctggcatattaagatcctgtgttctatacacagcatctcacacac 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 cagtaaagagcatacctggcatattaagatcctgtgttctatacacagcatctcacacac 640
Query: 618 acacatacacacacacacacacacacacacacacacacacaatatacatgtatatgtgta 677
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 acaca------cacacacacacacacacacacacacacacaatatacatgtatatgtgta 586
Query: 678 tatatatatatatatat----atatatatatat 706
||||||||||||||||| ||||||||||||
Sbjct: 585 tatatatatatatatatgtacatatatatatat 553
Score = 66.5 bits (34), Expect = 9e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 301 tatatatatatgtatatatatacatatatatata 334
||||||||||||||||||||||||||||||||||
Sbjct: 849 tatatatatatgtatatatatacatatatatata 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 169
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 2
Length of query: 765
Length of database: 1165
Length adjustment: 10
Effective length of query: 755
Effective length of database: 1155
Effective search space: 872025
Effective search space used: 872025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
