Query= MSMg01no062_e22.b1 MSMg01no062_e22.b1 CHROMAT_FILE:
MSMg01no062_e22.b1 PHD_FILE: MSMg01no062_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:45 2005
(814 letters)
>mm_chr1_5308037_5309250
Length = 1214
Score = 1365 bits (706), Expect = 0.0
Identities = 734/744 (98%), Gaps = 2/744 (0%)
Strand = Plus / Plus
Query: 1 tagtcttaaggtgttagactgatatttagccgattgtttttctgatccgtaaacttgcta 60
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 201 tagtcttaaggtgttagactgatatttagctgattgtttttctgatgtgtaaacttgcta 260
Query: 61 ttgactctggcagtgattgtcttatttcctacagtctaggtagatcacacgtgatagctg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ttgactctggcagtgattgtcttatttcctacagtctaggtagatcacacgtgatatctg 320
Query: 121 ttacaattacaatgtgaattatgtttatcctggaatgaagtccatcatgagtgtaataga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacaattacaatgtgaattatgtttatcctggaatgaagtccatcatgagtgtaataga 380
Query: 181 agccgctagaaggttgaagtataacagtgaggtgaacatgaaactttcatggaaacccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccgctagaaggttgaagtataacagtgaggtgaacatgaaactttcatggaaacccag 440
Query: 241 ccatcaactaaacagcagaggtaaatgagttatttataaagtatgagataataacttgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatcaactaaacagcagaggtaaatgagttatttataaagtatgagataataacttgat 500
Query: 301 aaattatgtcttgaattaatagtgctcaaataattgatttgctgagttaccagcaagttc 360
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaattatgtcttgaattaataatgctcaaataattgatttgctgagttaccagcaagttt 560
Query: 361 acctttgtgctaataatgctgctaattatgactacataagctaacaaatttaagaaaaca 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acctttgtactaataatgctgctaattatgactacataagctaacaaatttaagaaaaca 620
Query: 421 taaaacaaatgatttctgatagcaaataacagtttgtaattatattagttaaacaccatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaaacaaatgatttctgatagcaaataacagtttgtaattatattagttaaacaccatt 680
Query: 481 taagaaaattctcttttactttatttctctgggtatttaaaacaatctcttcatctactt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taagaaaattctcttttactttatttctctgggtatttaaaacaatctcttcatctactt 740
Query: 541 atctatgtaaccatctatccacaatccacatattgatccatccatgtatctccacctcgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atctatgtaaccatctatccacaatccacatattgatccatccatgtatctccacctcgt 800
Query: 601 attcatccatctgtccatccactcatcct--gtccattcatccattaatccacacaccta 658
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 801 attcatccatctgtccatccactcatcctctgtccattcatccattaatccacacaccta 860
Query: 659 ccaacctatttacctatccatatatccattcctccacctacccatgtatccatctacaca 718
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ccaacccatttacctatccatatatccattcctccacctacccatgtatccatctacaca 920
Query: 719 cacacacacacacacacacacaca 742
||||||||||||||||||||||||
Sbjct: 921 cacacacacacacacacacacaca 944
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 814
Length of database: 1214
Length adjustment: 10
Effective length of query: 804
Effective length of database: 1204
Effective search space: 968016
Effective search space used: 968016
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_e22.g1 MSMg01no062_e22.g1 CHROMAT_FILE:
MSMg01no062_e22.g1 PHD_FILE: MSMg01no062_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:46 2005
(779 letters)
>mm_chr1_5384173_5385351
Length = 1179
Score = 1328 bits (687), Expect = 0.0
Identities = 702/707 (99%)
Strand = Plus / Minus
Query: 73 gaataacttgtatcttattttattttcttgtttctgtgataaagctaaacctggcaaagc 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1179 gaataacttgtatcttattttattttcttgtttctgtgataaagctaaacctggcaaagc 1120
Query: 133 aactctgccttaatgagaaaaggtattgtttcaatttacagttcaagggtataattcatc 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 aactctgccttaatgagaaaaggtattgtttcaatttacagttcaagggtataattcatc 1060
Query: 193 acagtggggaagtcacagcaatgggaagcttgaattacctggtcacattgtgtccccagc 252
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 acagtagggaagtcacagcaatgggaagcttgaattacctggtcacattgtgtccccagc 1000
Query: 253 taagaaacggacaaatgcatgctagtgatcttcacagtctcatcacttgcatagaatcca 312
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 taagaaacagacaaatgcatgctagtgatcttcacagtctcatcacttgcatagaatcca 940
Query: 313 agaacccctgccaggggagtggttctgcccagagttaagatgggtcttcccatagcaatt 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 agaacccctgccaggggagtggttctgcccagagttaagatgggtcttcccatagcaatt 880
Query: 373 accataatcaagataatccttcatagcatacttacaggcccatcctctggtaattccaga 432
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 879 acgataatcaagataatccttcatagcatacttacaggcccatcctctgataattccaga 820
Query: 433 atctgtcaaagtggcaagtaaaaccagccatcacagttggcatgagggattgggggacat 492
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 819 atctgtcaaagtggcaagtaaaaccagccatcacagttggcatgagagattgggggacat 760
Query: 493 accacacttacattttgaatacaaaaatgtataatgtgaaaaaatatgctttttctgtct 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 accacacttacattttgaatacaaaaatgtataatgtgaaaaaatatgctttttctgtct 700
Query: 553 cttaccaaaagtaaataaactaaataactatctgtagaagttagccccggttcttcctcc 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 cttaccaaaagtaaataaactaaataactatctgtagaagttagccccggttcttcctcc 640
Query: 613 agatccatgcttccagaaataagactcagactgaaaatatattcatactttggccatatg 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 agatccatgcttccagaaataagactcagactgaaaatatattcatactttggccatatg 580
Query: 673 gctaggcgcttctctgactagatcataacttactataatgcatttactatactctactat 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gctaggcgcttctctgactagatcataacttactataatgcatttactatactctactat 520
Query: 733 ctaccacatagctggttacctgtgttcaggtaccatgtgtccttttc 779
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ctaccacatagctggttacctgtgttcaggtaccatgtgtccttttc 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 779
Length of database: 1179
Length adjustment: 10
Effective length of query: 769
Effective length of database: 1169
Effective search space: 898961
Effective search space used: 898961
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
