Query= MSMg01no062_e24.b1 MSMg01no062_e24.b1 CHROMAT_FILE:
MSMg01no062_e24.b1 PHD_FILE: MSMg01no062_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:46 2005
(686 letters)
>mm_chr1_38608119_38609207
Length = 1089
Score = 1199 bits (620), Expect = 0.0
Identities = 674/698 (96%), Gaps = 12/698 (1%)
Strand = Plus / Plus
Query: 1 aaaagttaactccctctttcacttgtcaaaccctgtggaattggtcattcctgtttcttt 60
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 192 aaaagttaactccctctttcacttgtcaaaccttgtggaattgatcattcctgtttcttt 251
Query: 61 cttagtcaataagtaataagctcttattttaggtcagaataaattattc--------ttt 112
||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 252 cttagtcaataagtaataagctcttattttaggtcagaataaattattcttttttttttt 311
Query: 113 ttttttttttgg-ttttttcgagacagggtttctctgtatagccctggctgtcctagagc 171
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 312 ttttttttttggtttttttcgagacagggtttctctgtatagccctggctgtcctggagc 371
Query: 172 tcactttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccgagt 231
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 372 tcactttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccaagt 431
Query: 232 gctgggattaaaggcgtgtgccaccacgtccagcagaataaattattcttaagattacag 291
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gctgggattaaaggcgtgcgccaccacgtccagcagaataaattattcttaagattacag 491
Query: 292 tgtgcttcctt---ccctccccccaagatttttattttgagcggctgtcactgaccaatg 348
||||||||||| ||| |||||||||| || ||||||||||||||||||||||||| ||
Sbjct: 492 tgtgcttccttccccccgccccccaagaattctattttgagcggctgtcactgaccagtg 551
Query: 349 tctacaaaccttacataccaaggaagccatcaataatgtaacagcactctagcattaata 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tctacaaaccttacataccaaggaagccatcaataatgtaacagcactctagcattaata 611
Query: 409 ttaagcacatcacatttttttcttaaacactaaagcttaagattaacagactctcattct 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ttaagcacatcacatttttttcttaaacactaaagcttaagattaacagactctcattct 671
Query: 469 ttcactatgaaaatatttataattcaaaaaaatcaacatatcatttcctagtcacataaa 528
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 672 ttcactatgaaaatatttgtaattcaaaaaattcaacatatcatttcctagtcacataaa 731
Query: 529 ttattaaatgctttgaattcttgaaagattaataaatactaaggactacatattttcact 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ttattaaatgctttgaattcttgaaagattaataaatactaaggactacatattttcact 791
Query: 589 gataatcagaaaaaaatgtacctattaaaggtaaaaccatttttaccttcttggaaatct 648
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gataatcagaaaaaaacgtacctattaaaggtaaaaccatttttaccttcttggaaatct 851
Query: 649 tggaaaagattttctaaaatttggtagtgttgagtgtc 686
||||||||||||||||||||||||||||||||||||||
Sbjct: 852 tggaaaagattttctaaaatttggtagtgttgagtgtc 889
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1089
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1079
Effective search space: 729404
Effective search space used: 729404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_e24.g1 MSMg01no062_e24.g1 CHROMAT_FILE:
MSMg01no062_e24.g1 PHD_FILE: MSMg01no062_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:46 2005
(644 letters)
>mm_chr1_38702873_38703916
Length = 1044
Score = 1094 bits (566), Expect = 0.0
Identities = 599/610 (98%), Gaps = 1/610 (0%)
Strand = Plus / Minus
Query: 1 tttttatattcttatttcattaaatcgtggcctgcttctcttgtgaaccgcacccttatt 60
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 609 tttttatattcttatttcattaaatcgtggtctgcttctcttgtgaattgcacccttatt 550
Query: 61 gtacctttgtgtttattacatatccttctgtctgattttcagagtttgaaaacaatacta 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gtacctttttgtttattacatatccttctgtctgattttcagagtttgaaaacaatacta 490
Query: 121 ttttcttgcctttatttgtccgtgggattaatgccacccaggtgtctcttttattatgct 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttttcttgcctttatttgtccatgggattaatgccacccaggtgtctcttttattatgct 430
Query: 181 cttctttcccctagagactttgggtcctggctccccagccccacctccagacccctactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cttctttcccctagagactttgggtcctggctccccagccccacctccagacccctactt 370
Query: 241 tactggtagcctgtgatacaatagttctgtaaatttgtttgcctgtggaaggctctagat 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 369 tactggtagcctgtgatacaatagttctgtaaatttgtttgcctgtggcaggctctagat 310
Query: 301 tggtggactggtttcataatttccattttggtccacttttggttttctcgagtgtatctt 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tggtggactggtttcagaatttccattttggtccacttttggttttctcgagtgtatctt 250
Query: 361 caaacacccttaaaagaaaagaatgtgtggaagacaagcttgctgggattttttttgtgt 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 249 caaacacccttaaaagaaaagaatgtgtggaaaacaagcttgctgggattttttt-gtgt 191
Query: 421 tttgtttttgttttgttttgtttttggtaaaaacagcattctactttgacgcatggctaa 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ttcgtttttgttttgttttgtttttggtaaaaacagcattctactttgacgcatggctaa 131
Query: 481 tatctggctgagtctagttttttgtaatgtccttattctgcaaatattagcacattgacg 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 130 tatctggctgagtctagttttttgtaatgtccttattctgtaaatattagcacattgacg 71
Query: 541 actcaacattttgctaggtcatgcctccgtttttactaattgttctaggtcgctgacagg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 actcaacattttgctaggtcatgcctccgtttttactaattgttctaggtcgctgacagg 11
Query: 601 tctttagata 610
||||||||||
Sbjct: 10 tctttagata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
