BAC Information

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BAC

Clone NameMSMg01-062G23
Chromosome1 (Build37)
Map Location 175,246,641 - 175,372,611
singlet/doubletdoublet
Overlap geneDarc, Cadm3
Upstream geneIgsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403
Downstream geneAim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062G23.T7 (MSMg01no062_g23.b1)MSMg01-062G23.TJ (MSMg01no062_g23.g1)
ACCAG288410AG288411
length1,1231,130
length of high quality
(start - end)		605 (123 - 727)670 (87 - 756)
definitionCHROMAT_FILE: MSMg01no062_g23.b1 PHD_FILE: MSMg01no062_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:01 2005CHROMAT_FILE: MSMg01no062_g23.g1 PHD_FILE: MSMg01no062_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(175,372,068 - 175,372,611)(175,246,641 - 175,247,310)
sequence
GCCCCATNTNNNNAACACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATGAAGTAGAAGCCCCCTTTTGTGAAATGGAAGTTATT
TCATAATATTTTATATGCGCGTGCTATACACCACACATTATATGTAATCT
ATAACACATATATAATATACATATGGCCACATAGTGCATAATTGTCTCAG
ACACAAGGTTAAACTTTATTACTCAACCACTAAGGGCTACCCTTTCCCCA
GGTTACCTCACAGAACATTACAGTAACTCTGACTCAAAGCCTAAGTTACT
GGAGCTGGGATGAAATGAAGACTCGTAGTCAGTTGCTCAGAAACACATCC
ATCACTTCTGTTCGCACCTATTGTATTCTGCTAAGATGCCCATTTTCTTG
CTCTTGCTATGCCTTGCCTTTTTAGAACATCTGGGAATAATTCTTTACCC
AAGATACAAACCATTTTTTTTTAATTACGTATTTTCCTCAGTTACATTTC
CAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCGCACCACTTCCCTAC
CCATCCATTCCCATTTTTTTGGCCCTGGCATTCCCCTGTACTGGGGCATA
TAAAGTTTGCAAGTCCAAAGGGCCTCTCTTTCCAGTGATGGCCGACTAGG
CCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCTGGGGTACTGGT
TAGTTCATATTGTTGTTCCACTGATACAAACCATCTTTAAGGATGCAGGA
AGATTAATCAAACCCTAGATGGTGGATCCTACAATTCTCCAACCCCATGG
TTCCTATTTCTTGTTCATCCCATCCTTCCCTGAACCTGTTACACAGCTCA
AAATACACCTAAATTTCCTTCCACAGAAAGATCAATAAACATCAAATTTG
CTCCAGATTCTTGGCTGCAAAAAAACATAAATTGAACTTCAGCCTAGCTT
TAAAAAAATTCTTGTTTTTCCTTAAAAAAATAATTAACCCTCCAAAGATC
TTTTTAAGAGGATTATATGGAAACCAAAGTCCCTGGGTCTCAAAACTTTC
ACAATTAAAAAAGGGGTTTCCTTCAATACCTTTTTCTCTCCCTATCCCTT
AAAATTTTTAAAAACTCCCCCTT

NCCACTTTTTNTTATAAGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTTATAGTCCCCATATGATGACAG
GAAAAAAATCAACACCCTCTTTCTGTTACCCCATTATGGAATCTGAAATT
TCCGAGTCTTGGTGTGACCAAGATTGTTGCTTAGGTGAGTCAAAACAGAT
GCTCTATAATACAAAAGATCAAATCCCAGAGATTTAACAAAACACATACA
CACACGCACACACACACTACCACCACCACCACCAGCAACAACAACAACAA
CACAACCAGGCTATCAGTTTGAGAGAGACAAGGAAAACATGGAAAGAGTT
GGGGAGAGAAAAGGGAAAGGGAAAATGATGTAACTGTGTTTTAATTTAAA
ACATATATTAAGTAAGGAAGAATAAAGTGGACTTCTTCATAAGCAATCTG
AGGCATTTGGGTAAGGAATGTCCTGTCCTGAGCCACACTCCGTGAAATTG
GTACCCTGAATCACTAAGAATGCCTTTGCATAGTATGGAAGCCCTGACTA
AAATAAACAGACAACATAAAAATGAAAAAAAAAAGAATAGTTGATATAAT
TTCAAGATAGAAACCAGGATTCTGGCTGTGACTCCAAGTTGCTAAGAGAT
AAGAATTGTCATTGATTCAACTGTGGATTGGCTGACTAAAGAAGACATTG
CTGGAAGCATCTGCAGTATTCCAGAAGGCCCTGATGGAATGGCCTCTCCA
GCCTTCATCACTTCAAGCAACCAACTCTCCTGTCAGCCAACCCAGGTCTT
CTCAGTGTCGGCCTCTTGCTTGGCTTGGTACATGGCTGCCTTGTGGACTC
AGGCACGACCATGAAGCCCTTCCCTCAACTGTCTTTCTTCCAGTCCCCTC
AACCTTTTCTTTCGGAACTTTCCATGTCAAAAATTGAATCCCTTCTTACT
TATTCTTGGTCTGGGGGCATCCACAGATTTGCAACGGGCAAATTAATTTT
GTTCAGCTTTTGAACCCCAAGGGTTATTCAAAGGTGTAGGTTTTTTTTTT
TAATGGGTAAAAATTATCTTTCTCTATAAAGGTGAAAAAATTTTTCCCGG
GTTTTCTTATTTAAATTTTTATATGTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_g23.b1 MSMg01no062_g23.b1 CHROMAT_FILE:
MSMg01no062_g23.b1 PHD_FILE: MSMg01no062_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:01 2005
         (605 letters)



>mm_chr1_175372068_175373072
          Length = 1005

 Score = 1052 bits (544), Expect = 0.0
 Identities = 544/544 (100%)
 Strand = Plus / Minus

                                                                       
Query: 13  acattatatgtaatctataacacatatataatatacatatggccacatagtgcataattg 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 acattatatgtaatctataacacatatataatatacatatggccacatagtgcataattg 485

                                                                       
Query: 73  tctcagacacaaggttaaactttattactcaaccactaagggctaccctttccccaggtt 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tctcagacacaaggttaaactttattactcaaccactaagggctaccctttccccaggtt 425

                                                                       
Query: 133 acctcacagaacattacagtaactctgactcaaagcctaagttactggagctgggatgaa 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 acctcacagaacattacagtaactctgactcaaagcctaagttactggagctgggatgaa 365

                                                                       
Query: 193 atgaagactcgtagtcagttgctcagaaacacatccatcacttctgttcgcacctattgt 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 atgaagactcgtagtcagttgctcagaaacacatccatcacttctgttcgcacctattgt 305

                                                                       
Query: 253 attctgctaagatgcccattttcttgctcttgctatgccttgcctttttagaacatctgg 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 attctgctaagatgcccattttcttgctcttgctatgccttgcctttttagaacatctgg 245

                                                                       
Query: 313 gaataattctttacccaagatacaaaccatttttttttaattacgtattttcctcagtta 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gaataattctttacccaagatacaaaccatttttttttaattacgtattttcctcagtta 185

                                                                       
Query: 373 catttccaatgctatcccaaaagtcccccataccctcccccgcaccacttccctacccat 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 catttccaatgctatcccaaaagtcccccataccctcccccgcaccacttccctacccat 125

                                                                       
Query: 433 ccattcccatttttttggccctggcattcccctgtactggggcatataaagtttgcaagt 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ccattcccatttttttggccctggcattcccctgtactggggcatataaagtttgcaagt 65

                                                                       
Query: 493 ccaaagggcctctctttccagtgatggccgactaggccatcttttgatacatatgcagct 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  ccaaagggcctctctttccagtgatggccgactaggccatcttttgatacatatgcagct 5

               
Query: 553 agag 556
           ||||
Sbjct: 4   agag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no062_g23.g1 MSMg01no062_g23.g1 CHROMAT_FILE:
MSMg01no062_g23.g1 PHD_FILE: MSMg01no062_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:01 2005
         (670 letters)



>mm_chr1_175246441_175247510
          Length = 1070

 Score = 1257 bits (650), Expect = 0.0
 Identities = 665/670 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatatgatgacaggaaaaaaatcaacaccctctttctgttaccccattatggaatctga 60
           ||||||||||||||||||||||||||||  |||||||||||||   ||||||||||||||
Sbjct: 201 ccatatgatgacaggaaaaaaatcaacaaactctttctgttactttattatggaatctga 260

                                                                       
Query: 61  aatttccgagtcttggtgtgaccaagattgttgcttaggtgagtcaaaacagatgctcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttccgagtcttggtgtgaccaagattgttgcttaggtgagtcaaaacagatgctcta 320

                                                                       
Query: 121 taatacaaaagatcaaatcccagagatttaacaaaacacatacacacacgcacacacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatacaaaagatcaaatcccagagatttaacaaaacacatacacacacgcacacacaca 380

                                                                       
Query: 181 ctaccaccaccaccaccagcaacaacaacaacaacacaaccaggctatcagtttgagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaccaccaccaccaccagcaacaacaacaacaacacaaccaggctatcagtttgagaga 440

                                                                       
Query: 241 gacaaggaaaacatggaaagagttggggagagaaaagggaaagggaaaatgatgtaactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacaaggaaaacatggaaagagttggggagagaaaagggaaagggaaaatgatgtaactg 500

                                                                       
Query: 301 tgttttaatttaaaacatatattaagtaaggaagaataaagtggacttcttcataagcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttttaatttaaaacatatattaagtaaggaagaataaagtggacttcttcataagcaa 560

                                                                       
Query: 361 tctgaggcatttgggtaaggaatgtcctgtcctgagccacactccgtgaaattggtaccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgaggcatttgggtaaggaatgtcctgtcctgagccacactccgtgaaattggtaccc 620

                                                                       
Query: 421 tgaatcactaagaatgcctttgcatagtatggaagccctgactaaaataaacagacaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaatcactaagaatgcctttgcatagtatggaagccctgactaaaataaacagacaaca 680

                                                                       
Query: 481 taaaaatgaaaaaaaaaagaatagttgatataatttcaagatagaaaccaggattctggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaaaatgaaaaaaaaaagaatagttgatataatttcaagatagaaaccaggattctggc 740

                                                                       
Query: 541 tgtgactccaagttgctaagagataagaattgtcattgattcaactgtggattggctgac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtgactccaagttgctaagagataagaattgtcattgattcaactgtggattggctgac 800

                                                                       
Query: 601 taaagaagacattgctggaagcatctgcagtattccagaaggccctgatggaatggcctc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taaagaagacattgctggaagcatctgcagtattccagaaggccctgatggaatggcctc 860

                     
Query: 661 tccagccttc 670
           ||||||||||
Sbjct: 861 tccagccttc 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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