BAC Information

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BAC

Clone NameMSMg01-062J21
Chromosome1 (Build37)
Map Location 51,147,863 - 51,148,570
singlet/doubletsinglet
Overlap geneTmeff2
Upstream geneEG666970, LOC100041993
Downstream geneSdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014, Stat4, LOC100042634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062J21.T7 (MSMg01no062_j21.b1)MSMg01-062J21.TJ (MSMg01no062_j21.g1)
ACCAG288550AG288551
length1,1031,148
length of high quality
(start - end)		---713 (87 - 799)
definitionCHROMAT_FILE: MSMg01no062_j21.b1 PHD_FILE: MSMg01no062_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:24 2005CHROMAT_FILE: MSMg01no062_j21.g1 PHD_FILE: MSMg01no062_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTTTTTTGNNNNCCAGTGGGCGNATAGACTACTATGGGAGAGGATCCGC
GGAATTCTCTGTTTANTNGGCCTTTATTTTTTCNAGGGNNANNNGGNNCN
CNGGAGCCCCTTTTAAAGCCTTCCNNGCANANANNAGANAANAGCNCNCN
ANCAGAAGGAGGANGGGNAAAGAAANNNNCCCAANCGGNNGCNNGCCNGG
GAGNGGAGNNNCCNCGGAGNGNNANGGGACGGGCNCGGCCNNNNGGNCCA
ANGGACAGNGNCCNNNGCCNNACAGAAGNNNNGCAGNNNAANGAGCNCCC
NNNGGNCAGNNNNNGAACNNAGATCANAAGCCANGGGGGNNCGGNNCAGG
AACNNNNCCCCGGNGCCCAGGNGNNCAAGGNNNNNCCCAATTTTTTTTTC
NANNAAANNCAGNGNANCNGGNNNNANGAGGAGGACCCCACCCCACGNAG
ACCCGAGCCCGGNACAGGGAGANAAGAAGGGAAAAANNNGCANNCNNNNA
CAGGNNGACCGGCAANGGAACCAGCACCANNGGNGGAAAAGGCNGNCNNN
NNCCACGGGAGGGNNNAAGCNCCNNNGNCNAAGAACAAGNGACCANAGGN
AGGNGGGNNCANNNCGGGGNCNNCAANNCAANNCCNNGGANCNACCGGCC
GGNCACGGNANCAANACCGGGCAGNNAANANCACCAAGGCNCGGNAGNAC
AGCNGGAGAACAGGGAGGGGGANNCCCCCAGAAGNNCNNNAANGGNNGAG
AANAGTTTTGGCCANCCNGGGNGNNNNGNNANCCCAAAGGAANNNGAGAA
NGGCNCNNNCCAAACCCGAAGAANGGAGAAGGAAANNNGAGGGGGAAGGN
ANNGAANCGGAAGGNGGCCNNCAGAAAGAAGGGCANNNNAACAAAAAAAA
CCCCGCCAACCAGGAAAAAGGGGGAGCANCCAANANCAGAGNCCACAGCA
AANCCAGGAAAAAAACCGGAAGNNCNAAAAAAAGAAACNNAACAAGGGGA
GAAAGGCCAACCAGAAAACAAAAGGGNAAGAAAAGGGGGAAGAGGCAAAC
CCAAAAGCCCGCCACGCCAAGGAAGAAAAAAAGNAAAAAGGGAAAAAAAG
GGA

NCCGCTTTGNNNNNACGATGCGAGNCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTAAAGAATACTGACTTTGTGCTG
CAGTCTTTTCCCTTCTTTTTCCTGTGGTGCATACAAGGGAAGGAGGAGTG
TCACACATGCCAGGCAAGCACACGTGCTGCTGCTCAGTTTTCGGTCAACT
TGACACATCAACCTACCTGAGAACTTAAAATGTAGAATTACCTCCATCAG
ATTGGCCAGTGGGCATGTCTACAGGGAATTAATTATTGATGTGGGAGGAT
CTAGCCTACTTTGCACAGTGCCACCTCTGGGCAGGTACATGGTCCTGGAA
TATATAAAAAAGCAAGCTAAGCATGCTTCCAGTTATAGGCCAGGAAGCAA
ATCCCCCCCTCCCCCACCCCCATGGCCTGTGCTTAGTCCCTGTCTCCAGA
ATCCTGTCTTGAGCTCCTGGCCTGGATTCTCTTGAAGATGAACTGCAACC
CCTTCCTCCCCAAGTTGAACAGAAAGGGAACAAGAATAGCATCCTACTGC
TGCTGGCATCTCTGAGGATAGGTTCATTATTCAGACTATGATTTGGATTA
GTGTGTTTTTTTTTTCATTCCTCACACTGCATGATAGAGTCATCGCTCAT
CGCAGAAATGCTTCATACATCTCCAATACAACCATTTAAATAGGTCTTGA
ATCATACCACTTGAGAAAAATGAAAACATTCCAACCAATTGATTGGAATT
GTTAAACTGATGACTACAATTTTGAGGATTTTTTTAATATATATATTTCA
AGTGAGGATGGCAGTATTGTATACCACTGTTCAAAACAAGAAAAATCACA
ACCTTCTGAAGTCTTAAAAAACTTATTGTTGTTGTTAGAGAAAAGGGCCT
TTAAGATAAATAACTTTCGTATTACAGATAGGAATTATTTACTACTAAGG
GGTACCACCCAAAAATCCAGTTCTCTCTTTGACAAGGTAAGGATTTGAGA
ACGCCTACTTATCTCAAACCATGGATCCCCTTGCAGTGTTGAAGAATTTG
GGAAAAAAAAACCTTTAAAAAACTTTTGTATTCCAAAACCCAAATCTCTC
CCCATTCCCCCAAATTGTTTTTCAAAAAAGGAATATGTCTTATACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_j21.g1 MSMg01no062_j21.g1 CHROMAT_FILE:
MSMg01no062_j21.g1 PHD_FILE: MSMg01no062_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:24 2005
         (713 letters)



>mm_chr1_51147664_51148773
          Length = 1110

 Score = 1255 bits (649), Expect = 0.0
 Identities = 695/713 (97%), Gaps = 8/713 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgactttgtgctgcagtcttttcccttctttttcctgtggtgcatacaagggaaggagg 60
           ||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||
Sbjct: 200 ctgactttgtgctgcagtcttttcctttc-ttttcctgtggtgcatataagggaaggagg 258

                                                                       
Query: 61  agtgtcacacatgccaggcaagcacacgtgctgctgctcagttttcggtcaacttgacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agtgtcacacatgccaggcaagcacacgtgctgctgctcagttttcggtcaacttgacac 318

                                                                       
Query: 121 atcaacctacctgagaacttaaaatgtagaattacctccatcagattggccagtgggcat 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atcaacctaccggagaacttaaaatgtagaattacctccatcagattggccagtgggcat 378

                                                                       
Query: 181 gtctacagggaattaattattgatgtgggaggatctagcctactttgcacagtgccacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtctacagggaattaattattgatgtgggaggatctagcctactttgcacagtgccacct 438

                                                                       
Query: 241 ctgggcaggtacatggtcctggaatatataaaaaa---gcaagctaagcatgcttccagt 297
           |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||
Sbjct: 439 ctgggcaggtacatggtcctggaatatataaaaaaaaagcaagctaagcatgcttccagt 498

                                                                       
Query: 298 tataggccaggaagcaaatccccccctcccccacccccatggcctgtgcttagtccctgt 357
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 499 tataggccaggaagcaaatcccccc-tcccccacccccatggcctgtgcttagtccctgt 557

                                                                       
Query: 358 ctccagaatcctgtcttgagctcctggcctggattctcttgaagatgaactgcaacccct 417
           |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 558 ctccaggatcctgtcttgagctccgggcctggattctcttgaagatgaactgcaacccct 617

                                                                       
Query: 418 tcctccccaagttgaacagaaagggaacaagaatagcatcctactgctgctggcatctct 477
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 618 tcctccccaagttgaacagaaacggaacaagaatagcatcctactgctgctggcatctct 677

                                                                       
Query: 478 gaggataggttcattattcagactatgatttggattagtgtgttttttttttcattcctc 537
           ||||||| |||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 678 gaggataagttcattattcagactatgatttggattagtgt---ttttttttcattcctc 734

                                                                       
Query: 538 acactgcatgatagagtcatcgctcatcgcagaaatgcttcatacatctccaatacaacc 597
           |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 735 acactgcacgatagagtcatcgctcatcacagaaatgcttcatacatctccaatacaacc 794

                                                                       
Query: 598 atttaaataggtcttgaatcataccacttgagaaaaatgaaaacattccaaccaattgat 657
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 795 atttaaataggtcttgaatcatagcacttgagaaaaatgaaaacattccaaccaattgat 854

                                                                
Query: 658 tggaattgttaaactgatgactacaattttgaggatttttttaatatatatat 710
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 tggaattgttaaactgatgactacaattttgaggatttttttaatatatatat 907


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1110
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1100
Effective search space:   773300
Effective search space used:   773300
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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