BAC Information

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BAC

Clone NameMSMg01-062O08
Chromosome1 (Build37)
Map Location 7,584,517 - 7,585,153
singlet/doubletsinglet
Overlap genenone
Upstream geneSt18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
Downstream geneLOC665063, LOC665069, LOC100039408, Sntg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062O08.T7 (MSMg01no062_o08.b1)MSMg01-062O08.TJ (MSMg01no062_o08.g1)
ACCAG288763AG288764
length1,2011,206
length of high quality
(start - end)
640 (124 - 763)726 (87 - 812)
definitionCHROMAT_FILE: MSMg01no062_o08.b1 PHD_FILE: MSMg01no062_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:58 2005CHROMAT_FILE: MSMg01no062_o08.g1 PHD_FILE: MSMg01no062_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTTTTTNNNNATCAATGCGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTCACAGATATCAGGCCTTAAAAGCCCAAGTGGGTTGAA
AGTCTGATTGCTCTGACCTTAAATAAAATACTACCCGCATGTCTACTGTT
GGGCAAAGGATAGTGACTGGATGCTGGCTCTGGAATAGATGTTCCCTGAC
AGTGATGTATGGTAAATGATCATGGACACAGTGCTGGACGTTCAACAGTC
ACCGAGGCCAAAATCAGACTGGAGGCAGAAGATTCTGGATGGTAATGTGG
TTACCAGAAGGGTCCCTTTTTCCAAGCTTGTATGACTCTATGCATTGTGG
TATAGCAGAGGAGAGCACTTGCCTAGCTGCAGGAAGCCTAGGGTTTTATC
TATTTTCAGAACCCTTTAGAGATTTATCTAATCTGTGCAGACTTTTTGGT
CCCTTCCTCTAATAGGGGTGAGCTTCTGGTTACTAGGACTCTGGTGGTTA
TACCCAGGTGCTCACTTCTAATGTCAGCATATTTTGCTGTCAGGACTTTG
AACAGGAGTGCCTCCATGTTTGTTTAATTTATTTTGTGTTTTAAGTGTTC
ACTACAGTGTAGAAGCTACTGTTTTCTTAGAGTCATTTACTATCTCTGGC
TCTTAAATTTTTTTTTTTACCTCCTCTTTGGTGTAGAACATTGAGCCTTG
AGAAGAGGGATTTGATGAAGACATTCCATTTATGACAGAGTGTTCCAAAG
TCTTTAACACTGCACATTGTCCAATTTTGGATCTCTGTGTTAGTTCCCAT
ATACCCCCTCCCCCCCAAAAAAAAAGTTTCTCTGATGAGGGTTTAACGAT
GCTCTAATTTATGGAAAATTGATGCTTATAATGCTTGACAGTTTGTTTGA
ATCTTTAATAGTCCTTTTTGCTATCTTTCTTATTGTACTGAATATGAAAA
TCTTTTAACTATTATCCATTTGACCGATTTATTTTCTGGTTTTCCTACCC
CCTTAAACTTGTTTTGTTTTTATTGAAATTTTTCCTTAAATAACTTTTAT
ATTATCTATTTTTCATAAATTTTGTTCTCCTTAATACCTTTTCTCTATAC
GATTCCCCCTTTTATAATAACTGTTTTGGCTTTTCTTTTCTTTTCTCTCC
TTTTTTTTATAAATTAAATACTCCTTATTTATTAATTTATAATTCTCTCA
T
CCACCTCTTTTTTAAACAAGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAATTGTCAAAGGAAAAAA
TCTACCAGATGAACTCCCATTTCTGAAAATCTATACCCCAAATACAAGGC
CACCCACATTCATGAAAGAAAATTTAGTAAACCTCAAAGCACACATTGCA
CCTCACACAATAATAGTGGGAGAGTTCAATACCCCACTCTCATCAATGGA
TAGATCATAGAAACAGAAGCTAAACAGGGATACAGTGAAACTAACAGAAG
TTATAAACCAAATGGATCCAATAGATATCTATAGAACGTTTCATCCTAAA
ACAAAAGAATATTCCTTCTTCTCCTGGTATTGAAATTGACCACAAAACAG
GCCTCAGTTGATACGAGATTGAAATAATCCCATGCATCCTATCAAATCAC
CACAGACTAAGGCTGGTCTTCAATGGCAACAAAACCAACAAAAAGCCCAC
ATACACATGGAAGTGTGGTGCAACGTGGAGTAACCAAGACAGCATAGAAG
AGACAGAGGTGGAGCCAACTGCAGCAGTGGAAGTGGTGGCTGAAATGACT
TCCTTCACCTCTCTGCTCACACTTTTTCCTCCTTGCATGAGCTCTAGGAC
CCAACCAGGCCAGAGATCTCCATGAAGCCTCTGGTACACAGGCCTACAAA
TACCCAGGATACAATCCACAGAACTCAAGAATATCAACAATCCACAGTGC
CCAATTGAGGTCGCTTCAGTCGCACTTGAGGGGGAGAAGAAAATAATCAC
TGGAGGCAGAGGATAGGAGGACCTTGGTAGGAGAGCGGAGGAGAAAAGGA
GACCATGAGCAGGTATTGGAGGAAACAGGGGAGAATCTCTGAGGGGCAGC
AGAATGAATGTAAATATGTAACCTTAAGGGTGGGAAGTGGGGCAACCCTT
TAAAAAGTACCAAAGACCTGAGAGTGGATAAAATTCTCAGGAACTCAAAT
GGAAGGGACCTTAAATGAAAATAACCAAAAATGGGCAAAAAGAAAATTTG
TAAAATTCTACCCCCCGTTAAAAAAATAAGGCCCTCTAAGAAAAAGGGTA
GGGTGTTAAAAAATTTTTGACCCCAAAATGTTTTCAATGTTTAAAAAAAC
ATAAGTTGAACTAAAATAGAAAAAAAAGTTGTAGTGGTAACTATCGTTCC
CGTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_o08.b1 MSMg01no062_o08.b1 CHROMAT_FILE:
MSMg01no062_o08.b1 PHD_FILE: MSMg01no062_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:58 2005
         (640 letters)



>mm_chr1_7584313_7585352
          Length = 1040

 Score = 1154 bits (597), Expect = 0.0
 Identities = 627/637 (98%), Gaps = 1/637 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   atactacccgcatgtctactgttgggcaaaggatagtgactggatgctggctctggaata 64
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 atactacatgcatgtctactgttgggcaaaggatagtgactggatgctggctctggaata 264

                                                                       
Query: 65  gatgttccctgacagtgatgtatggtaaatgatcatggacacagtgctggacgttcaaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatgttccctgacagtgatgtatggtaaatgatcatggacacagtgctggacgttcaaca 324

                                                                       
Query: 125 gtcaccgaggccaaaatcagactggaggcagaagattctggatggtaatgtggttaccag 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 gtcaccgaggccaaaatcagactggaggcagaagattctggatggcaatgtggttaccag 384

                                                                       
Query: 185 aagggtccctttttccaagcttgtatgactctatgcattgtggtatagcagaggagagca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagggtccctttttccaagcttgtatgactctatgcattgtggtatagcagaggagagca 444

                                                                       
Query: 245 cttgcctagctgcaggaagcctagggttttatctattttcagaaccctttagagatttat 304
           ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 cttgcttagctgcaggaagcctagggttttatttattttcagaaccctttagagatttat 504

                                                                       
Query: 305 ctaatctgtgcagactttttggtcccttcctctaataggggtgagcttctggttactagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctaatctgtgcagactttttggtcccttcctctaataggggtgagcttctggttactagg 564

                                                                       
Query: 365 actctggtggttatacccaggtgctcacttctaatgtcagcatattttgctgtcaggact 424
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 565 actctggtggttatacccaggtgctcacttctgatgtcagcatattttgctgtcaggact 624

                                                                       
Query: 425 ttgaacaggagtgcctccatgtttgtttaatttattttgtgttttaagtgttcactacag 484
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 625 ttgaacaggagtgcctccatgtttgttttatttattttgtgttttaagtgttcactacag 684

                                                                       
Query: 485 tgtagaagctactgttttcttagagtcatttactatctctggctcttaaatttttttttt 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 685 tgtagaagctactgttttcttagagtcatttactatctctggctcttaaattttttcttt 744

                                                                       
Query: 545 ta-cctcctctttggtgtagaacattgagccttgagaagagggatttgatgaagacattc 603
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 745 taacctcctctttggtgtagaacattgagccttgagaagagggatttgatgaagacatcc 804

                                                
Query: 604 catttatgacagagtgttccaaagtctttaacactgc 640
           |||||||||||||||||||||||||||||||||||||
Sbjct: 805 catttatgacagagtgttccaaagtctttaacactgc 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)