BAC Information

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BAC

Clone NameMSMg01-063C01
Chromosome1 (Build37)
Map Location 26,218,806 - 26,219,091
singlet/doubletsinglet
Overlap genenone
Upstream geneBai3, LOC665595
Downstream gene4931408C20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063C01.T7 (MSMg01no063_c01.b1)MSMg01-063C01.TJ (MSMg01no063_c01.g1)
ACCAG288940AG288941
length672745
length of high quality
(start - end)
443 (26 - 468)286 (136 - 421)
definitionCHROMAT_FILE: MSMg01no063_c01.b1 PHD_FILE: MSMg01no063_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:21 2005CHROMAT_FILE: MSMg01no063_c01.g1 PHD_FILE: MSMg01no063_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCGCTATACGACTCCTATCCGGAGAGGATCCGCGGAATTCTTTGTT
TACCTCTATACCTCCTTTTTAATAGGATATTTTGTTTCTCTGGAGTCTAA
CTTCTTGAGTTCTTTATATATATTGGATATTAACCTTCTATCAGATTAAG
GATTGGTGAAAATCTTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTTTTG
ACAGTGTCCTTTTCTTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTT
GTTGATTCTTGTTCTTACATCACAAGCCACTGGTGTTTTGTTCAGGAATT
TTTCCCCTATATCCATATTTTTGTGGCTGTTTCACACTTTCTCCTCTATA
AGCTTTAGCGCCTTTTTTTTTTCTTTTTTTTTTTTGGGGAGGTCCTTGAT
CCACTCAGAATTGACCTTAGTACAAGGAGATAAGAATGGATCAATTCACA
TTCTTCTACATGATAACTGCCAGTTGAGCCAGCACTATTTGTTGAACATG
CTGGCTTTTTTCCACTGGATGGATTCAGCTCCTTTGTCAAAGATTAAATG
ACCGTATGGTGCGTGGGGTTCTTTTCTGGGACTTCAATTCCCACTCCATT
GGTCTACTTGTCTGTTTGTCATACCACTACTATGCAGATTTTTGTCCAAT
TTGTACCGAACGAACAGCTTGA
NNNNNNNNNNNNNNAAGGGGNNNNNNNNNNNNNCCCNCCCCNNTNCCCTT
ACCCCCCNCTCACTATGATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAAGAAAGCAAAC
ATTTGATGGTTAAATTAATTACTGAAGGTGTTGAACAACAATAGTCATTT
GAATTTAAGAAAGATGGACAATTTAAGAAATCAACAAACTACCATGGCAA
TCTCTATCACAATGATGTCAAATCACTACATGTAAAAACATAAATAAAAT
GAATGATCAGTTTTACCAAACATCCAGTGTAAGTCTAGGGAAGAAGATTT
TACTGGAATAGGACAGGAAATAGTCAATGTTGTAAAAAGAAAATCAACTT
TGCATGTAGAAATTCACTTGTAGGCAACCCACCCATACTTGGAGGTACCT
TTCTTAAAATCAAGTCAAATAAATAAATGTCAGACAACACCTGAACAATT
TGGGTAAAAAATACAATTTCACACACAAAATAATAGAAATAAAATTTGAA
GCAGCAGTGTGCAGATGATTAGATATACTACTATTGCTGTTTAAGGCTAC
CATCCCTAAGAAACCCCCCAATAATCCTCTGAGTATCTTCTCAAGGATGA
TAACCTAAGTTCTTCCCAGATCCTTGCTCAGACTCCCCTGTAATAAAATA
ACCCACAGTACCCCCAGGTACTCATTCTTACCACAGTCTATTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_c01.g1 MSMg01no063_c01.g1 CHROMAT_FILE:
MSMg01no063_c01.g1 PHD_FILE: MSMg01no063_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:21 2005
         (286 letters)



>mm_chr1_26218606_26219291
          Length = 686

 Score =  514 bits (266), Expect = e-150
 Identities = 281/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaagaaagcaaacatttgatggttaaattaattactgaaggtgttgaacaacaatagt 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 486 ataaagaaagcaaacatttgatggttaaattaattactgaaagtgttgaacaacaatagt 427

                                                                       
Query: 61  catttgaatttaagaaagatggacaatttaagaaatcaacaaactaccatggcaatctct 120
           ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 426 catttgaatttaagaaagatgaacaatttaagaaatcaacaaactagcatggcaatctct 367

                                                                       
Query: 121 atcacaatgatgtcaaatcactacatgtaaaaacataaataaaatgaatgatcagtttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atcacaatgatgtcaaatcactacatgtaaaaacataaataaaatgaatgatcagtttta 307

                                                                       
Query: 181 ccaaacatccagtgtaagtctagggaagaagattttactggaataggacaggaaatagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccaaacatccagtgtaagtctagggaagaagattttactggaataggacaggaaatagtc 247

                                                         
Query: 241 aatgttgtaaaaagaaaatcaactttgcatgtagaaattcacttgt 286
           || |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 246 aacgttgtaaaaagaaaatcaactttgcatgcagaaattcacttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)