Query= MSMg01no063_e12.b1 MSMg01no063_e12.b1 CHROMAT_FILE:
MSMg01no063_e12.b1 PHD_FILE: MSMg01no063_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:34 2005
(466 letters)
>mm_chr1_17903788_17904653
Length = 866
Score = 439 bits (227), Expect = e-127
Identities = 303/349 (86%), Gaps = 34/349 (9%)
Strand = Plus / Minus
Query: 8 gaattctatttgcttcacattaaattagccatcgagatctggttgtacatgttctggtga 67
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gaattctatttgctttagattaaattagccatcgagatctggttgtacatgttctggtga 282
Query: 68 aactatgattacactgacggttctcatcatctccccaaatgttgtaatgtaacaatattc 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aactatgattacactgacggttctcatcatctccccaaatgttgtaatgtaacaatattc 222
Query: 128 ctaggtgttaaa--------------------------tgaaacaatagctaatgttcaa 161
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Sbjct: 221 ctaggtgttaaatgcagatgtcttaaccaaaatataattgaaacaatagctaatgttcaa 162
Query: 162 caatagcaaaaaaccaaaaacttcaatctgaaaaataacagaggtatacacacacacaca 221
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 161 caatagcaaaaaaccaaaaacttcaatctgaaaaataacagaggtat----acacacaca 106
Query: 222 cacacacacacacacacactcacatgcacatacacacacagagagagagagagagagaga 281
||||||||||||||||||||||||||||||||||||||| | | | | | | | | |
Sbjct: 105 cacacacacacacacacactcacatgcacatacacacac----acacacacacacacaca 50
Query: 282 gagagagagagagagagagagagagagagagagagagagagggtttcat 330
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 cacagagagagagagagagagagagagagagagagagagagggtttcat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no063_e12.g1 MSMg01no063_e12.g1 CHROMAT_FILE:
MSMg01no063_e12.g1 PHD_FILE: MSMg01no063_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:34 2005
(285 letters)
>mm_chr1_17798535_17799219
Length = 685
Score = 514 bits (266), Expect = e-150
Identities = 281/286 (98%), Gaps = 2/286 (0%)
Strand = Plus / Plus
Query: 1 catggactcatca-ccttttcctttgtttccttgaattatttcgctttccagtgtcagaa 59
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catggactcatcaccctttt-ctttgtttccttgaattatttcgctttccagtgtcagaa 259
Query: 60 ggattcttctgtgaacatcccattatagaatgaactatccaagtccattactcactgtag 119
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggattcttctgcgaacatcccattatagaatgaactatccaagtccattactcactgtag 319
Query: 120 gcagacatgtttgtttatgttgatagcttcttgtctcaggatgtaaatatcatggcatga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcagacatgtttgtttatgttgatagcttcttgtctcaggatgtaaatatcatggcatga 379
Query: 180 tggcatgggatgttttttatttgtttactgctttatttacttttcataagaaattatatg 239
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tggcatgggatgttttttacttgtttactgctttatttacttttcataagaaattatatg 439
Query: 240 tattctgcaaatacatgttgaatgaaaaagaataattatcacttta 285
||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 440 tattctgcaaatatatgttgaatgaaaaagaataattatcacttta 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
