BAC Information

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BAC

Clone NameMSMg01-063F23
Chromosome1 (Build37)
Map Location 57,326,385 - 57,326,667
singlet/doubletsinglet
Overlap genenone
Upstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869
Downstream geneLOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063F23.T7 (MSMg01no063_f23.b1)MSMg01-063F23.TJ (MSMg01no063_f23.g1)
ACCAG289128AG289129
length690682
length of high quality
(start - end)
317 (36 - 352)281 (56 - 336)
definitionCHROMAT_FILE: MSMg01no063_f23.b1 PHD_FILE: MSMg01no063_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:42 2005CHROMAT_FILE: MSMg01no063_f23.g1 PHD_FILE: MSMg01no063_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TTAGCTCTGAGCCACGTCTTTTAAGGGGGCTATTTGATTTTCTGGGGTCC
ACCCTCTTGAGTTCTTTATATATATTAGATATTAGTCCCCTATCTGATTT
AAGATAGGTAAAGATCCTTTCACAATCTGTTGGTGGTCTTTTTGTCTTAT
TGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAGGTCCCAT
TTGTCAATCCTCGTTCTTACAGCACAAGCCATTGCTGTTCTATTCAGAAA
TTTTTTCCCTGTGCCCATATCTTCGAGACTTTTCCCCACTTTTTCCTCTA
TTTGTTTCAGCGCCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGAT
TTGACCTTAGTACAAAGAGAGGAATGGGTCGATTCGCATTCTTCTACATG
ATAAAAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTC
CACTGGATGGTTTTAGCTCCCTTGCCAAAGATCAAGTGACCATAGGTGTG
TGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGT
CACTATTCCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGCACACC
TTTAGGTCAGGAATGGTGATTCCCCCAGAGGAACTTTTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACCTCCCCAATTCTGCGAATTACAGATTTGGGCTCTGACATGCTG
AATTGTGGCAGGGGTTTGTTGACCTACTCTTGTTTGTTTTGCTGGCTAGA
CTGTAAGGTCCCTGAGGATAAAACGTCATTTCCAAGTGTTTACTGAACAT
GTACTGTCTTTCAGTGGGAGCAGAGTAACCATTTAGGATAAGGACATGTA
AGCCACAGGTGCCTTTACTTACACAAAAACCCTGTAGGGTGCCGTGTTCA
CAGGCTGTCTATGCACACAACTGTATACTTTTGTAAAGTCTGCTAAAGAA
AGATGTTCTGGGCACAGATGGTTGAAACCGCCCACTGTCTCTTCCTACCT
CTTTTTGTTTTATGGCTTTGGTATGGCAACAGCCAAGGCCAGCATCTTGG
GTTTGTAACCAGTATACCACCTGTGTCCTGCACCTGTACGTGGCTCAATA
CTCTGGCGTTCCTGTCATGAGACCCGGAAGGCCTTAAAGGAAAACAACTC
AGTTTCCATTGAACTGGCCTCTACTGGTGGTGCACGGGGCTCTTGGAATG
TCGCTGAACATTTTAGGAGACATATAACGCGAAGCTCTGCTGACTGTAAT
TACCACCAGTAGGGTATAGTTATGCAGCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_f23.g1 MSMg01no063_f23.g1 CHROMAT_FILE:
MSMg01no063_f23.g1 PHD_FILE: MSMg01no063_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:42 2005
         (281 letters)



>mm_chr1_57326185_57326867
          Length = 683

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%), Gaps = 2/283 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctcccca-attctgcg-aattacagatttgggctctgacatgctgaattgtggcaggg 58
           ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 acctccccacattctgcgcaattacagatttgggctctgacatgctgaattgtggcaggg 424

                                                                       
Query: 59  gtttgttgacctactcttgtttgttttgctggctagactgtaaggtccctgaggataaaa 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gtttgttgacctactcttgtttgttttgctggctagactgtaaggtccctgaggataaaa 364

                                                                       
Query: 119 cgtcatttccaagtgtttactgaacatgtactgtctttcagtgggagcagagtaaccatt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cgtcatttccaagtgtttactgaacatgtactgtctttcagtgggagcagagtaaccatt 304

                                                                       
Query: 179 taggataaggacatgtaagccacaggtgcctttacttacacaaaaaccctgtagggtgcc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 taggataaggacatgtaagccacaggtgcctttacttacacaaaaaccctgtagggtgcc 244

                                                      
Query: 239 gtgttcacaggctgtctatgcacacaactgtatacttttgtaa 281
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gtgttcacaggctgtctatgcacacaactgtatacttttgtaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 683
Length adjustment: 9
Effective length of query: 272
Effective length of database: 674
Effective search space:   183328
Effective search space used:   183328
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)