BAC Information

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BAC

Clone NameMSMg01-063L24
Chromosome1 (Build37)
Map Location 32,846,227 - 32,846,530
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041238, Khdrbs2, EG408191
Downstream geneEG633498, LOC213711, LOC100040828, EG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063L24.T7 (MSMg01no063_l24.b1)MSMg01-063L24.TJ (MSMg01no063_l24.g1)
ACCAG289407AG289408
length6851,805
length of high quality
(start - end)
304 (44 - 347)---
definitionCHROMAT_FILE: MSMg01no063_l24.b1 PHD_FILE: MSMg01no063_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:14 2005CHROMAT_FILE: MSMg01no063_l24.g1 PHD_FILE: MSMg01no063_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCATATGGGAGAGGATCCGCGGAATTCTTCCATGCTACAAGCTTCAA
TCTCGAATTCTTCTCATGGCTTCACTTGATGATAGACCATAAAATATCAG
ATGAAATAAAACCTTTCCTTCCCAAGTTACTTTTGGTCACAATCTTCATC
ACAGCCACAGAAGGAAAACTAAAACAGTGGCCAGGATAAGAAAAAATATT
AACGTGGAATAAATTCCAATCTTAAATATTTTCATCTCAACAGAAAAAGT
ATGCATTTATTTTTCTCTGAAACTAATAAGTGTCTGCCTAAAATGTTTAT
TCACCTACCTTGTCTATCTGACAAGCCTTCAAATTTGGCTTATTGTAAAT
ATTCAGTTAATAAAATTGAAAGCAGCCACATTTTCATCCTTTTACAACCA
CAGCTATATATTAAAATTCTAGCAGAGGCCTCTGTCAAATTGAACTATTG
AACTTGGAATGGCGAAAGTCCTCCCCCATGCAAGAGATTTAAATCATTTT
CAAAGCTAATTTCCTGCTCCCAGATGGAGAACAAATCTAATCGAGCTTAC
TTCATTCTTTGGATGAATGCCAAAATGCCCCTTGCCTACTCCAAGAGAAA
GGAGACCAATTTCAGCAAAGGGGGTATCCAGACCTGTACCGCACCCACCA
AGAAAGTGATCCTGTATAAAGGCATGGCCCGCTCA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNNTTTTNN
NNNNNNNNNNTTTTNCCNNNTTTNNNNNTTTTNNNCCNNTNNNNNNTTNN
NCCNNNNNNNNNCNNNNNNNNCTTTNNNNTACCNTTTCCCNNTTNCNNNN
TCCCTCCTCCNCNNTCCAATTNCCNCTCCCCCCNTAACCCCTCTTTCTTC
CTCTCCCCCCACCCGTCACTCCTTNNTNCGCCGCNTTTCTCTTNNNTCCC
TCCTCGTTTCCTNTNTNTTCAATTTTNAGTTATATTACATTCTATCACCC
TGCTACTNATNTCTTCTGTNCGCNTTAGATCTCTNTCNGACTTTGATTCT
CGTTGTNTTTGCTTCTCGCTGTGCTCGTTATCGCTCTGCGTGCTCNTGCN
TCTNCGCTNCTCTACTTCGTGACTCCTCTTCCCTCCTCTGCTCTCGTCCG
TTCCTNGCGTCGTCGCCTCTTGCGCCCTTCCTCCGGCGTCTGTCGTTCTT
CTCCGTGCCTGGCGNATCGTTCCTCTCTCGTGCGTGTGTCGCGTACTCTT
CGCGTNGGTTGGAGGTATTGTCTTCAGCGCGGTGTTGAGTGTGCGCGCTG
TGAGAATGTCGCTTGCGGGCGNTATAGATATTATGCCGTNGTGTTTGCTC
GCGACCCGCGGCGCGTTACNTGCTGTACTATNTAGTGCCTCTTAGCTGAC
GANTTATGCGGCATCATGATCATATCGACTGANGTCGTATCGATCTCTCG
CTACGTCTATCACTATCTCGACCTGTGTCTCATTTTGCTCGTCGTCTTGT
NTCGTTGCTCTGCTGTCCGGTCGGCTCTGTCGCTGCTTCTGATGTATGCG
TCTTCTCTCGTTCTCTGCTTGCGCGTTCGGTCGTCGTGGCTTCGTCNTGG
TTGATAGCTCGTCTTGTGTCGCATGTGTCGGTTCCGGCGTCGTCGTCTGC
GTGCGCGCGTCTNTTGTGCGTCGNCTGCGCGCTTGTCGCCTCTGTCTGTC
TATTANCTCGGCTCTGTCTTCGCGCGTCTTNATCTATCGTCTCCTCGTGT
GCGACGTGCGTGNCGATGATGTTTACTGCGTGTCGNGAGCGTAGTTATGA
CNCGCGATAGTTACATCGAGTGACGGCGGAGATCGGAGAGCGGTGNCGTT
GGTGCGTGACGCATGCTGTAGATACCGCGGTGGGCATGAGAGTTGAGTAT
GTAGTGTGACGNCAGTGNTTATGTGTGATGGTTAGTGACTGCGTATGTGC
AGCGGACGAGTCTGCATGCGAGATATGAGATGATACGGTTCTGATGAGGC
AGTGTGANATGAGTGTATATTACAGACGACGCAGTGNANGTCGCGGAGGA
AGGAGAGTCAAGTACGAAGCGGGTAGACAGAGAAGTACGAATTAACATGG
TAATAGANAAGTAGATTGANCAGAGTGAGTACGGTNTACGACGGACGAGA
CAGAGCACGCGCGCGTTATCGTGTGAAGTGTACGAGGGATAGAGTGTGGA
ACGTAGCTATCTGGNTATGTATAAGTAGATACACTGTATCATCACTCGAT
TCACTGACGCGAGTGAGCGCCGATGCGANCAGTNTGTGCGAGATGACATA
TATATACGAGAGTGATANTATTAGTCGCTGTACTTCGATCGTCTTAGAGA
GAGTGTGGAGATGANTGTGACTATTGTCGCTGTGCTAGGNATGAATATGT
GTGTAGCGAGCATGAANAGTATAGAGATAGACGACGNTCAGTCGGTACTG
ACTGTGATATGATGATCAGATCCGCGCGTGTGTAGACATGAGTGACTGTG
TGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_l24.b1 MSMg01no063_l24.b1 CHROMAT_FILE:
MSMg01no063_l24.b1 PHD_FILE: MSMg01no063_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:14 2005
         (304 letters)



>mm_chr1_32846027_32846730
          Length = 704

 Score =  557 bits (288), Expect = e-163
 Identities = 300/304 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttcaatctcgaattcttctcatggcttcacttgatgatagaccataaaatatcagatg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 gcttcaatctcgaattcttctcatggctttacttgatgatagaccataaaatatcagatg 260

                                                                       
Query: 61  aaataaaacctttccttcccaagttacttttggtcacaatcttcatcacagccacagaag 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaataaatcctttccttcccaagttacttttggtcacaatcttcatcacagccacagaag 320

                                                                       
Query: 121 gaaaactaaaacagtggccaggataagaaaaaatattaacgtggaataaattccaatctt 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gaaaactaaaacagtggccaggataagaaaaaatattaatgtggaataaattccaatctt 380

                                                                       
Query: 181 aaatattttcatctcaacagaaaaagtatgcatttatttttctctgaaactaataagtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatattttcatctcaacagaaaaagtatgcatttatttttctctgaaactaataagtgt 440

                                                                       
Query: 241 ctgcctaaaatgtttattcacctaccttgtctatctgacaagccttcaaatttggcttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 ctgcctaaaatgtttattcacctaccttgtctatctgacaagccttcaaatttggcttag 500

               
Query: 301 tgta 304
           ||||
Sbjct: 501 tgta 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)