BAC Information

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BAC

Clone NameMSMg01-064B05
Chromosome1 (Build37)
Map Location 175,348,734 - 175,349,139
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3
Downstream geneAim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064B05.T7 (MSMg01no064_b05.b1)MSMg01-064B05.TJ (MSMg01no064_b05.g1)
ACCAG289650AG289651
length1,203728
length of high quality
(start - end)
417 (37 - 453)160 (77 - 236)
definitionCHROMAT_FILE: MSMg01no064_b05.b1 PHD_FILE: MSMg01no064_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:44 2005CHROMAT_FILE: MSMg01no064_b05.g1 PHD_FILE: MSMg01no064_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGAGCAGTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAAT
TCCAACGAGAAGAACCAATACCTACAGTTAGAAAAAAACAGCATTAAACG
GGATGCTTACGATACTCAGCAAAAACCAAACCCCCAAGTTAAGGCAGTTA
AGTTTCTCTCCATGGCTGACCTTCACACTGTAGACCTGTATACATCACAG
TTAAAACATGTTGGAAATGATTGACCTAGTTTTTAAGAAGGTCATATTTT
TATTCTTGAGCTGTTTTGTCCTCCTTGTAACAGAGATGGAAAACCAGACA
TCCCCAGACAAGAAGCCCTGGAGGACACTGTAAGACAAATATTCTCTGAA
GTAGCAGGAGGATAGAACCAGCCTCTCCCTGAGCAAACAATGCATACCAA
TTTACAAGTGTAAAGTGCACTACAGTCACTAGGGCAAGGTTGGGTAATGG
AATTTGTTTTACCCCCCCCTGTCAATCAAGAGATCTGATTATGAAAAGAC
CACCCTTTTTTGTGTGTTGATGTTGAAATCAAAGAAAACCAACCACCAGT
AAGTGAGTGGGTGGTGTGCATTGGGCTGGGCTTGTCCCTTAGGCTATGAA
CTCCCTGGTAAAGCAGGAAATAACTTTTGTGGAGTTCCCTATATCTAAAA
TACCTCTGGTTGAGACCTCACAGCTGGAGGAGAAACTCTGCTGAGGCTTG
TAAAAAGGAAACTGAAAACTAGCATTTGCTTGGGCAGAGCCTTAATATAT
AATTATTTTGCCCCAGCATCAGGGTTTAGGACTCAGCTATAGGGCCAGGA
CTAGCCCAGCTTCAAAGTGAAAGAAGATAGTTGAGAGTATTTTCTGCTTT
CTGTCTTCCAAGACCTGATTTTCATGATTTTCATGTCCTACTACTCATAG
TGAAAATCTTTGGGAGGCGGAGGGTTTGAACTTTCAGGACATACCCCCAT
TCCCCTGATTTGAGAATTAAGGTTGTTTTTGAAAAAAAAAAAATCCCCTT
GAAGTATGTAAAAATATTTCATAAATTTTTCTTAAAAAGACTTTTTGAAA
CTTTTTGTTTTTTCCCCAAACTTATAAAGAAAAAAAGCTCCTGGGTTTCT
TTAGATTTTTTAAAAAAAGGTATATTTATTTGACCTTTTTTTCTTAACTA
AAAAAAATAGTTTCGCTGAAATAATCCTGCTTTTAAAAACCTCTCTTTGG
AAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGGCAAAAGAAAACACTTTCTG
AATAGAATAGCATTAGCACAAACAGTAAGATCAACAATTAAATTGAATTT
CTCAACTGATATAGGGCTAAAACCCAAAATACATAAGGAGCTCAAGAAAC
TAGACCAAAAAAAAAAAACAAAAACAAAAAACAAAGTTAGGCCGCGAATT
TATAGAACGTGGAGCATCAGAAAGTCTAAGTCAGGAGAAAATTGCTCCAA
TAAAAGGTAAAACCTCCACAATGGGGCTGGAAAATAAACCCCCGAAAAAG
GGGGGGGCCCCCCCGGGGAAAAGGGGGAATCTCAAAAAAANTTTTTTTTN
NNAAAANNTTATTTTTTTTTTTTTTGGTGTGGGGCGGCCGCCCNCCCCTC
CTCCCNCNNNCTTGGGTTCTTTTTTTCTTTTCCCCCCCCNNCGGGGGCTT
TGGTCGGGGGGGGGGGGGGGTGTTTTAAATATTAATAAAAGAAAGNNNNC
ANNANNATAAACCCCCCCCCCCCCTTTTGTTTGTNNNNNNNTTTTTTTTN
NNATTTGAACAGGGAGAGAGGAGGAGGAGGGGGNNAGAGCTGATCGTATG
GTGATGNAGTTGGGCTGGGGCAGGNTGGCCGAGTGCTCAGTNAGAGAAGA
AAGAGGAAGGATGAGAGAAAAGATGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_b05.b1 MSMg01no064_b05.b1 CHROMAT_FILE:
MSMg01no064_b05.b1 PHD_FILE: MSMg01no064_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:44 2005
         (417 letters)



>mm_chr1_175348524_175349340
          Length = 817

 Score =  762 bits (394), Expect = 0.0
 Identities = 403/406 (99%)
 Strand = Plus / Plus

                                                                       
Query: 11  gaattccaacgagaagaaccaatacctacagttagaaaaaaacagcattaaacgggatgc 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gaattccaacgagaagaaccaatacctacagttagaaaaaaacagcattaaacgggatgc 270

                                                                       
Query: 71  ttacgatactcagcaaaaaccaaacccccaagttaaggcagttaagtttctctccatggc 130
           ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
Sbjct: 271 ttacgatactcagcaaaaaccaaaccaggaagttaaggcagttaagtttctctccatggc 330

                                                                       
Query: 131 tgaccttcacactgtagacctgtatacatcacagttaaaacatgttggaaatgattgacc 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tgaccttcacactgtagacctgtatacatcacagttaaaacatgttggaaatgattgacc 390

                                                                       
Query: 191 tagtttttaagaaggtcatatttttattcttgagctgttttgtcctccttgtaacagaga 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tagtttttaagaaggtcatatttttattcttgagctgttttgtcctccttgtaacagaga 450

                                                                       
Query: 251 tggaaaaccagacatccccagacaagaagccctggaggacactgtaagacaaatattctc 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tggaaaaccagacatccccagacaagaagccctggaggacactgtaagacaaatattctc 510

                                                                       
Query: 311 tgaagtagcaggaggatagaaccagcctctccctgagcaaacaatgcataccaatttaca 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tgaagtagcaggaggatagaaccagcctctccctgagcaaacaatgcataccaatttaca 570

                                                         
Query: 371 agtgtaaagtgcactacagtcactagggcaaggttgggtaatggaa 416
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 agtgtaaagtgcactacagtcactagggcaaggttgggtaatggaa 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)