BAC Information

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BAC

Clone NameMSMg01-064N24
Chromosome1 (Build37)
Map Location 11,950,311 - 11,950,551
singlet/doubletsinglet
Overlap geneA830018L16Rik
Upstream geneC030045D06Rik
Downstream geneLOC665262, LOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064N24.T7 (MSMg01no064_n24.b1)MSMg01-064N24.TJ (MSMg01no064_n24.g1)
ACCAG290224AG290225
length755737
length of high quality
(start - end)
245 (46 - 290)184 (450 - 633)
definitionCHROMAT_FILE: MSMg01no064_n24.b1 PHD_FILE: MSMg01no064_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:08 2005CHROMAT_FILE: MSMg01no064_n24.g1 PHD_FILE: MSMg01no064_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACACAGTACTCTTCCTAAAATCACACTTGAAATAATTTTAAACTT
AGTACTTAGCTCTTGTTTAAAATCTTACCAATCCATGCATCTAAACAACG
TGTTCATCACAGAAGTCCTCTCTAACCCAGGGACTCCTACCCACTCTGGG
TGACTGTTCCCTTCTTTGACCACCTCCTTAATATGTTGTCTCAAGAAATG
GTGTAACTAATGTTACAATTGTGTATCTGTATCTGTCCACAGCAGTAGAG
AAGAGTGAGCAGATAACCTGACCTGTCTCTGCATCTGCAGGCCACAAAGC
CCAGTAAACACATATTTTTTACACACACCCACACACCACACACACACACA
CACATTTTTAAGTCCATAATGATGGATGTTTGAATGGTAATCTGGCCTGT
ACAACTAGGCTCCTGGGATTTATGTAGGAAGATATTAACTGTTTCTAACT
TGAGACAAACATGTCCAAGACTGTTTGATTTGTGAAATTGTAGCCAGTTA
GCAAAGCCAAAGTATCCAGAGAGAATTCTGAAGCAGTTCAGCTGCTGTGA
ATACACTCAAATCTTTTCAATAGCAGAAAGTGCAAGGCTAACATCCACAG
TCTCAGGAATAAGCTTTGCTACCGAGCAGCCTATGCATTCCACACGTTCA
TGATAATGCATTATGCTTAATATAAAAGACTGTCCCACAATACGTTCCTG
ATGCT
ATCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AGTCAAAACAACCCTGAGATTCCACCTCACACCAGTGAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCATGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGTGGTTCCTTAGAAAATTGGACATAGTACTACTGGAGGATT
CAGCAATACCTCTCTTGGGTAACTTCCCCCCACCCCCCTTCTGGTAAGAA
GGAACATGCTCCACTATGTTCATAGAAAAAAAAAAATAATAGCCGGAAGC
TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGCATCATCCTGAGTGAGG
TAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGA
TATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACAATTTGCTAAC
CACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_n24.b1 MSMg01no064_n24.b1 CHROMAT_FILE:
MSMg01no064_n24.b1 PHD_FILE: MSMg01no064_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:08 2005
         (245 letters)



>mm_chr1_11950107_11950751
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacacagtactcttcctaaaatcacacttgaaataattttaaacttagtacttag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaattcacacagtactcttcctaaaatcacacttgaaataattttaaacttagtacttag 386

                                                                       
Query: 65  ctcttgtttaaaatcttaccaatccatgcatctaaacaacgtgttcatcacagaagtcct 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 ctcttgtttaaaatcttaccaatccatgcatctaaacaacatgttcatcacagaagtcct 326

                                                                       
Query: 125 ctctaacccagggactcctacccactctgggtgactgttcccttctttgaccacctcctt 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 ctctaacccagggactcctacccactctgggagactgttcccttctttgaccacctcctt 266

                                                                       
Query: 185 aatatgttgtctcaagaaatggtgtaactaatgttacaattgtgtatctgtatctgtcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatatgttgtctcaagaaatggtgtaactaatgttacaattgtgtatctgtatctgtcca 206

            
Query: 245 c 245
           |
Sbjct: 205 c 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)