BAC Information

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BAC

Clone NameMSMg01-065C16
Chromosome1 (Build37)
Map Location 26,154,451 - 26,154,836
singlet/doubletsinglet
Overlap genenone
Upstream geneBai3, LOC665595
Downstream gene4931408C20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065C16.T7 (MSMg01no065_c16.b1)MSMg01-065C16.TJ (MSMg01no065_c16.g1)
ACCAG290441AG290442
length682698
length of high quality
(start - end)
384 (47 - 430)36 (114 - 149)
definitionCHROMAT_FILE: MSMg01no065_c16.b1 PHD_FILE: MSMg01no065_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:35 2005CHROMAT_FILE: MSMg01no065_c16.g1 PHD_FILE: MSMg01no065_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCCGC
GGAATTCATTAACACCATCTAAAAAAAGTTCTTGTTTTTATATAATTATT
AGTTCAAAGAAAATTTTGATTCATTATATATTGACTTTACTAGCTATATA
TAAAAGGATTTAAAAGTCACGAAATCAAGAGAAAAGTGGTATGTATTCCA
TGCTGTTCCACAGATGAAAGTAGAAGGATCTAATGAAAGGAAGAGAAAAG
TTAAAGGAAGCAATGGGAGATGGGAGAGAAACATGGGGTAAAAGGAGGAC
AAGGTATAACAGTATACAGGTCTAAAAATCTCACTGTGAAAATAATGTAC
TTTTATTCGAACAAAAATTGATATTATTTTATTTTTTTTATTTATTACGT
ATTTTCCTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCT
CCCCCCCTAACTTCCCTACCCATCCATTCCCATTTTTTTGGCCCTGGCAT
TCCCCTTGTACTGGAGCATATACAGTTTGTATGTTCAATGGGTCTCTCTT
TCCAGTGATGTTCGACTAGGTCATCTTTTGATATTTATGCAGCTAGAGTC
TAGATTTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCATCTATAGGGT
TGCAGGTCCCTTTATCTCCTCGGTTACCCTCN
GGGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTATCAAGTGCCAACTACTGATG
GAGATATTGGAGATTCAACAATGACAAAAGAGAAAATTTGATTCATTTAC
TCATAAAACATAACCAATGGAGAAGATGGTACAAATTATGATAGACTGAG
AGGTGATTTTATCTAAGTTAAATGATGAAGTGAGCAATGATATAAATTAT
ACTGGGGAAAATATTTATAAATGGTAGCTACGAAAGACATTTAAAAAACG
GGTAGGGGAGTGGGAATGGATATTGAATGGGTTACAAAACAAAAAAAAGA
GAAAGAAAAGAAAAAAAACAAACAAGAAGAGAAAAAAAAATAACCCTGAA
AGCAAATCGATATAAAACGAAAGAAGAAAGCTCAACGGGGGGTTTAGGAA
TAGGGGGGGGGGGGATAAAGGGGGGAGAGGAAAGGAAGAAGAAAAGTATA
GCCTGAAAAAACAAAAGACAATAACACGGGGAAGGAAGAAAGGGTGGGAG
CAATGGCGTAAGGGAGAACATGAAAAAAAGGGAGGAAAAAAAACGAGCGG
GAGGATGGGTATAACCGGAAGCTCCACGATCTTGCCTACACCCTGTGAGG
GGGGGGGAGCAAGGGGGAACCCCACGGACGGTGGTAAACCTTGCCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_c16.b1 MSMg01no065_c16.b1 CHROMAT_FILE:
MSMg01no065_c16.b1 PHD_FILE: MSMg01no065_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:35 2005
         (384 letters)



>mm_chr1_26154309_26155093
          Length = 785

 Score =  642 bits (332), Expect = 0.0
 Identities = 370/386 (95%), Gaps = 8/386 (2%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcattaacaccatctaaaaaa-agttcttgtttttatataattattagttcaaaga 64
           |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 528 gaattcattagcaccatctaaaaaatagttcttgtttttatataattattagttcaaaga 469

                                                                       
Query: 65  aaattttgattcattatatattgactttactagctatatataaaaggatttaaaagtcac 124
           |||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||
Sbjct: 468 aaattttgattcattatatattgactttaccagctatataaaaaaggatttgaaagtcac 409

                                                                       
Query: 125 gaaatcaagagaaaagtggtatgtattccatgctgttccacagatgaaagtagaaggatc 184
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gagatcaagagaaaagtggtatgtattccatgctgttccacagatgaaagtagaaggatc 349

                                                                       
Query: 185 taatgaaaggaagagaaaagttaaaggaagcaatgggagatgggagagaaacatggggta 244
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 taatgaaaggaagagaaaggttaaaggaagcaatgggagatgggagagaaacatggggta 289

                                                                       
Query: 245 aaaggaggacaaggtataacagtatacaggtctaaaaatctcactgtgaaaataatgtac 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 288 aaaggaggacaaggtataacagtatacaggtctaaaaatctcactgtgaaaataatgtcc 229

                                                                       
Query: 305 ttttattcgaacaaaaattgata-----ttattttatttttt--ttatttattacgtatt 357
           |||||||| ||||||||||||||     ||||||||||||||  ||||||||||||||||
Sbjct: 228 ttttattccaacaaaaattgataatattttattttattttttatttatttattacgtatt 169

                                     
Query: 358 ttcctcaattacatttccaatgctat 383
           ||||||||||||||||||||||||||
Sbjct: 168 ttcctcaattacatttccaatgctat 143


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 785
Length adjustment: 9
Effective length of query: 375
Effective length of database: 776
Effective search space:   291000
Effective search space used:   291000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)