BAC Information

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BAC

Clone NameMSMg01-065G10
Chromosome1 (Build37)
Map Location 26,101,926 - 26,102,249
singlet/doubletsinglet
Overlap genenone
Upstream geneBai3, LOC665595
Downstream gene4931408C20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065G10.T7 (MSMg01no065_g10.b1)MSMg01-065G10.TJ (MSMg01no065_g10.g1)
ACCAG290621AG290622
length680676
length of high quality
(start - end)
380 (49 - 428)324 (76 - 399)
definitionCHROMAT_FILE: MSMg01no065_g10.b1 PHD_FILE: MSMg01no065_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:53 2005CHROMAT_FILE: MSMg01no065_g10.g1 PHD_FILE: MSMg01no065_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACCCGAGGCCTACCGAATGGCTGAGAAACACCTGAAAAAA
TGTTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAG
ATTCCATCTCATACCAGTCAGAATGGCTAAGATCAAAAATTCATGTGACA
GCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
TGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCT
CAGAAAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGG
GCATATATCCAGAAGATGTCCCAACCGGCAAGAAGGACACATACTCCACT
ATGTTCATAGCAGCCTTATTTATAATAGTTAGAAGCTGGTTAGAACCCAG
ATGCCCTTCAACAGAGGAATGGATACAAAAAATGTGATACATTTACACAA
TGGAGTACTACTCAGCTATTAAAAAGAATGATTTCATGAAATTCCTAGGT
AAATGGTTGGACCTAGAGGGTTTCATCCTGAGTGAGGTAACATAATCACA
CTTGAACTCCCATACATATGTACTCACTGATAAGTGGATATTAGCCCAGA
AACTTAGTATATTGAGATTTCAGGTACCCT
TATCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCATACCTATATAAGATTAAAAAAA
GAGTCTTATTCAGACATAAATCATTGTTTGTTTTATAATTAAATTAACTG
GTACTTAATATCTCTGCAGGTAATTTATTTCATGTGGATAACTAGCATGA
AACAGCCAACCAGTTTGATCTTTCAAAACCAAGGAGAGAAAGTGGCCAGG
CTTGAATTTAAAGGTGACTTTTTTTCTGGTACTATTATAGAGGTCCTGGC
GGATTCTTTTCTCCTTCCCATTTATTACTATAATTAATGATACTTGAAGT
TTTTAATACAGTTTTTCTTCAGGGGATTTCAAAACATGATAATATTGTTC
ATGTCTCTTTCAAGGCACCAAAAATATTTTCTCAATAACTTAATATATTA
ATCATACACAACCTTATCCTTTATTCAAGGACACTAGTATGACTATGTGT
TAAAAACCAGGACTGGGACCAACTTCACTGCTCATATTTCACATGTTGAC
TCCCATATTCTCCACATCTTTTGTGCCTGTAACGAAATGCATAGAACTCC
TGTATTGAACCTCTATTGTAATTTTGTGACTAAAAAATTATTATTCTTCT
GATTGAATTGTTTGACCTTATGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_g10.g1 MSMg01no065_g10.g1 CHROMAT_FILE:
MSMg01no065_g10.g1 PHD_FILE: MSMg01no065_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:53 2005
         (324 letters)



>mm_chr1_26101726_26102449
          Length = 724

 Score =  619 bits (320), Expect = 0.0
 Identities = 323/324 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatacctatataagattaaaaaaagagtcttattcagacataaatcattgtttgtttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tcatacctatataagattaaaaaaagagtcttattcagacataaatcattgtttgtttta 465

                                                                       
Query: 61  taattaaattaactggtacttaatatctctgcaggtaatttatttcatgtggataactag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 taattaaattaactggtacttaatatctctgcaggtaatttatttcatgtggataactag 405

                                                                       
Query: 121 catgaaacagccaaccagtttgatctttcaaaaccaaggagagaaagtggccaggcttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 catgaaacagccaaccagtttgatctttcaaaaccaaggagagaaagtggccaggcttga 345

                                                                       
Query: 181 atttaaaggtgactttttttctggtactattatagaggtcctggcggattcttttctcct 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 344 atttaaaggtgactttttttctggtactattatagaggtcctggtggattcttttctcct 285

                                                                       
Query: 241 tcccatttattactataattaatgatacttgaagtttttaatacagtttttcttcagggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tcccatttattactataattaatgatacttgaagtttttaatacagtttttcttcagggg 225

                                   
Query: 301 atttcaaaacatgataatattgtt 324
           ||||||||||||||||||||||||
Sbjct: 224 atttcaaaacatgataatattgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)