Query= MSMg01no065_n06.b1 MSMg01no065_n06.b1 CHROMAT_FILE:
MSMg01no065_n06.b1 PHD_FILE: MSMg01no065_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:26 2005
(591 letters)
>mm_chr1_162978625_162979615
Length = 991
Score = 984 bits (509), Expect = 0.0
Identities = 573/609 (94%), Gaps = 27/609 (4%)
Strand = Plus / Minus
Query: 4 ggaattcttatgtttc-c-gagcatgtaaactgccttggccattttcccagaatcatggc 61
|||||||||||| || | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ggaattcttatg--tcactgagcatgtaaactgccttggccattttcccagaatcatggc 604
Query: 62 agccgggcatgatggcacactcctgtaatcccagcacttacatggagataggaggctcag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 agccgggcatgatggcacactcctgtaatcccagcacttacatggagataggaggctcag 544
Query: 122 gcgtcccagggcagcttgtattactgaggttctgtctcacagaacaaaaaccagaaaata 181
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gcatcccagggcagcttgcattactgaggttctgtctcacagaacaaaaaccagaaaata 484
Query: 182 gaatgaagagtcttgctcttagtgtcagcatctcctgtgatatgctttagatgaagcgtc 241
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 483 gaatgaagagtcttgctcttagtgtcagcatctcctgtgacatgctttagatgaagtgtc 424
Query: 242 ctaatataaggacactttatgctcatcacagcgtcatttataacaggaacagg------- 294
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 423 ctaatataaggacactttatgctcatcacagcatcatttataacaggaacaggatgagat 364
Query: 295 ------------cagaggtgcttaagtttatggtacaaagaaattaatatttaagttcct 342
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aacaggaacaggcagaggtgcttaagtttatggtacaaagaaattaatatttaagttcct 304
Query: 343 tttgaatttttgtttgttatcttgcttttttaaggctgggtctcatgcagtcaaggcttc 402
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 303 tttgaatttttgtttgttatcttgctttattaaggctgggtctcatgcagtcaaggcttc 244
Query: 403 cttgagctcttgactgtcgagccttcatcttgaacagtgggtggggttacaggatgtacc 462
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 243 cttgagcttttgactgtcgagccttcatcttgaacagtggg----gttacaggatgcacc 188
Query: 463 ataacatccagctttcaactctcttttaaatgaaacttccctcacgtgcctcatagctca 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ataacatccagctttcaactctcttttaaatgaaacttccctcacgtgcctcatagctca 128
Query: 523 agctcaaagagagctaaagatattttaatacgaaggaaactcgggggcaagatgctgagg 582
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 127 agctcaaagagagctaaagatattttaatacgaaggaaacacgggggcaagatgctgagg 68
Query: 583 caggcaggt 591
|||||||||
Sbjct: 67 caggcaggt 59
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_n06.g1 MSMg01no065_n06.g1 CHROMAT_FILE:
MSMg01no065_n06.g1 PHD_FILE: MSMg01no065_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:26 2005
(534 letters)
>mm_chr1_162834917_162835850
Length = 934
Score = 1017 bits (526), Expect = 0.0
Identities = 532/534 (99%)
Strand = Plus / Plus
Query: 1 caggacagccagagctacacagagaaaccaagaaaataaaaaaattaaaaatgaggtggg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 caggacagccagagctacacagagaaaccaagaaaataaaaaaattaaaaatgaggtgag 260
Query: 61 agacgagcccgtgaacgtgctccaggccaccctggtctcaaagcaagagcctgtctcaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacgagcccgtgaacgtgctccaggccaccctggtctcaaagcaagagcctgtctcaag 320
Query: 121 aaccaaagcctggccaggtatggctaggtggccatacctataatctgagctctcagggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccaaagcctggccaggtatggctaggtggccatacctataatctgagctctcagggag 380
Query: 181 cagaggttcagaacttccaggtcagtccaggctccaggattttctgttccgggaataaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaggttcagaacttccaggtcagtccaggctccaggattttctgttccgggaataaaa 440
Query: 241 caaacccagccaaaccaaaacaacaacaaacaaacaatcaaacacccacggggaaaaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaacccagccaaaccaaaacaacaacaaacaaacaatcaaacacccacggggaaaaaaa 500
Query: 301 agaaaccaaaacaaagcccaaacaagcccaacagccacccagtaattgtttcttgtgaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaaccaaaacaaagcccaaacaagcccaacagccacccagtaattgtttcttgtgaga 560
Query: 361 tgtggaagtaatttgtttgtttgttttaaatcgatgttggtgagtttacagtgaagaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtggaagtaatttgtttgtttgttttaaatcgatgttggtgagtttacagtgaagaaag 620
Query: 421 gacagtctgggcatggggcccatgcctttaattcctgcacttggaagacagagacagatg 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 gacagtctgggcatggggcccatgcctttaattccttcacttggaagacagagacagatg 680
Query: 481 gaactcttgtgagttcaaagccagcctggtctacagaagaatttctaggatagc 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaactcttgtgagttcaaagccagcctggtctacagaagaatttctaggatagc 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|