BAC Information

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BAC

Clone NameMSMg01-065N06
Chromosome1 (Build37)
Map Location 162,835,117 - 162,979,285
singlet/doubletdoublet
Overlap geneRc3h1, Serpinc1, Zbtb37, Gas5, Dars2
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l, Gpr52, EG620750
Downstream geneCenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065N06.T7 (MSMg01no065_n06.b1)MSMg01-065N06.TJ (MSMg01no065_n06.g1)
ACCAG290945AG290946
length692691
length of high quality
(start - end)
591 (44 - 634)534 (66 - 599)
definitionCHROMAT_FILE: MSMg01no065_n06.b1 PHD_FILE: MSMg01no065_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:26 2005CHROMAT_FILE: MSMg01no065_n06.g1 PHD_FILE: MSMg01no065_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,978,683 - 162,979,285)(162,835,117 - 162,835,650)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAGATCCGCGGAA
TTCTTATGTTTCCGAGCATGTAAACTGCCTTGGCCATTTTCCCAGAATCA
TGGCAGCCGGGCATGATGGCACACTCCTGTAATCCCAGCACTTACATGGA
GATAGGAGGCTCAGGCGTCCCAGGGCAGCTTGTATTACTGAGGTTCTGTC
TCACAGAACAAAAACCAGAAAATAGAATGAAGAGTCTTGCTCTTAGTGTC
AGCATCTCCTGTGATATGCTTTAGATGAAGCGTCCTAATATAAGGACACT
TTATGCTCATCACAGCGTCATTTATAACAGGAACAGGCAGAGGTGCTTAA
GTTTATGGTACAAAGAAATTAATATTTAAGTTCCTTTTGAATTTTTGTTT
GTTATCTTGCTTTTTTAAGGCTGGGTCTCATGCAGTCAAGGCTTCCTTGA
GCTCTTGACTGTCGAGCCTTCATCTTGAACAGTGGGTGGGGTTACAGGAT
GTACCATAACATCCAGCTTTCAACTCTCTTTTAAATGAAACTTCCCTCAC
GTGCCTCATAGCTCAAGCTCAAAGAGAGCTAAAGATATTTTAATACGAAG
GAAACTCGGGGGCAAGATGCTGAGGCAGGCAGGTCACAGGGAGACCCTGT
CTCACCTTTTTAATTTTTTAAATTGATTTTCAAGACAGGGTT
TGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGGACAGCCAGAGCTACACAGAGAAACCAAGAAA
ATAAAAAAATTAAAAATGAGGTGGGAGACGAGCCCGTGAACGTGCTCCAG
GCCACCCTGGTCTCAAAGCAAGAGCCTGTCTCAAGAACCAAAGCCTGGCC
AGGTATGGCTAGGTGGCCATACCTATAATCTGAGCTCTCAGGGAGCAGAG
GTTCAGAACTTCCAGGTCAGTCCAGGCTCCAGGATTTTCTGTTCCGGGAA
TAAAACAAACCCAGCCAAACCAAAACAACAACAAACAAACAATCAAACAC
CCACGGGGAAAAAAAAGAAACCAAAACAAAGCCCAAACAAGCCCAACAGC
CACCCAGTAATTGTTTCTTGTGAGATGTGGAAGTAATTTGTTTGTTTGTT
TTAAATCGATGTTGGTGAGTTTACAGTGAAGAAAGGACAGTCTGGGCATG
GGGCCCATGCCTTTAATTCCTGCACTTGGAAGACAGAGACAGATGGAACT
CTTGTGAGTTCAAAGCCAGCCTGGTCTACAGAAGAATTTCTAGGATAGCC
AAGGGTATATAATAGAGAGACCCTGTCTCAACAACTGATCATAAGACAAA
TAACCAAGAAAGGACCGAACACCCAATTCTCTGCTTTTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_n06.b1 MSMg01no065_n06.b1 CHROMAT_FILE:
MSMg01no065_n06.b1 PHD_FILE: MSMg01no065_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:26 2005
         (591 letters)



>mm_chr1_162978625_162979615
          Length = 991

 Score =  984 bits (509), Expect = 0.0
 Identities = 573/609 (94%), Gaps = 27/609 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttatgtttc-c-gagcatgtaaactgccttggccattttcccagaatcatggc 61
           ||||||||||||  || | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ggaattcttatg--tcactgagcatgtaaactgccttggccattttcccagaatcatggc 604

                                                                       
Query: 62  agccgggcatgatggcacactcctgtaatcccagcacttacatggagataggaggctcag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 agccgggcatgatggcacactcctgtaatcccagcacttacatggagataggaggctcag 544

                                                                       
Query: 122 gcgtcccagggcagcttgtattactgaggttctgtctcacagaacaaaaaccagaaaata 181
           || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gcatcccagggcagcttgcattactgaggttctgtctcacagaacaaaaaccagaaaata 484

                                                                       
Query: 182 gaatgaagagtcttgctcttagtgtcagcatctcctgtgatatgctttagatgaagcgtc 241
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 483 gaatgaagagtcttgctcttagtgtcagcatctcctgtgacatgctttagatgaagtgtc 424

                                                                       
Query: 242 ctaatataaggacactttatgctcatcacagcgtcatttataacaggaacagg------- 294
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||       
Sbjct: 423 ctaatataaggacactttatgctcatcacagcatcatttataacaggaacaggatgagat 364

                                                                       
Query: 295 ------------cagaggtgcttaagtttatggtacaaagaaattaatatttaagttcct 342
                       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aacaggaacaggcagaggtgcttaagtttatggtacaaagaaattaatatttaagttcct 304

                                                                       
Query: 343 tttgaatttttgtttgttatcttgcttttttaaggctgggtctcatgcagtcaaggcttc 402
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 303 tttgaatttttgtttgttatcttgctttattaaggctgggtctcatgcagtcaaggcttc 244

                                                                       
Query: 403 cttgagctcttgactgtcgagccttcatcttgaacagtgggtggggttacaggatgtacc 462
           |||||||| ||||||||||||||||||||||||||||||||    ||||||||||| |||
Sbjct: 243 cttgagcttttgactgtcgagccttcatcttgaacagtggg----gttacaggatgcacc 188

                                                                       
Query: 463 ataacatccagctttcaactctcttttaaatgaaacttccctcacgtgcctcatagctca 522
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ataacatccagctttcaactctcttttaaatgaaacttccctcacgtgcctcatagctca 128

                                                                       
Query: 523 agctcaaagagagctaaagatattttaatacgaaggaaactcgggggcaagatgctgagg 582
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 127 agctcaaagagagctaaagatattttaatacgaaggaaacacgggggcaagatgctgagg 68

                    
Query: 583 caggcaggt 591
           |||||||||
Sbjct: 67  caggcaggt 59


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no065_n06.g1 MSMg01no065_n06.g1 CHROMAT_FILE:
MSMg01no065_n06.g1 PHD_FILE: MSMg01no065_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:26 2005
         (534 letters)



>mm_chr1_162834917_162835850
          Length = 934

 Score = 1017 bits (526), Expect = 0.0
 Identities = 532/534 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagagctacacagagaaaccaagaaaataaaaaaattaaaaatgaggtggg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 caggacagccagagctacacagagaaaccaagaaaataaaaaaattaaaaatgaggtgag 260

                                                                       
Query: 61  agacgagcccgtgaacgtgctccaggccaccctggtctcaaagcaagagcctgtctcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacgagcccgtgaacgtgctccaggccaccctggtctcaaagcaagagcctgtctcaag 320

                                                                       
Query: 121 aaccaaagcctggccaggtatggctaggtggccatacctataatctgagctctcagggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccaaagcctggccaggtatggctaggtggccatacctataatctgagctctcagggag 380

                                                                       
Query: 181 cagaggttcagaacttccaggtcagtccaggctccaggattttctgttccgggaataaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaggttcagaacttccaggtcagtccaggctccaggattttctgttccgggaataaaa 440

                                                                       
Query: 241 caaacccagccaaaccaaaacaacaacaaacaaacaatcaaacacccacggggaaaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaacccagccaaaccaaaacaacaacaaacaaacaatcaaacacccacggggaaaaaaa 500

                                                                       
Query: 301 agaaaccaaaacaaagcccaaacaagcccaacagccacccagtaattgtttcttgtgaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaaccaaaacaaagcccaaacaagcccaacagccacccagtaattgtttcttgtgaga 560

                                                                       
Query: 361 tgtggaagtaatttgtttgtttgttttaaatcgatgttggtgagtttacagtgaagaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtggaagtaatttgtttgtttgttttaaatcgatgttggtgagtttacagtgaagaaag 620

                                                                       
Query: 421 gacagtctgggcatggggcccatgcctttaattcctgcacttggaagacagagacagatg 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 gacagtctgggcatggggcccatgcctttaattccttcacttggaagacagagacagatg 680

                                                                 
Query: 481 gaactcttgtgagttcaaagccagcctggtctacagaagaatttctaggatagc 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaactcttgtgagttcaaagccagcctggtctacagaagaatttctaggatagc 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)