BAC Information

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BAC

Clone NameMSMg01-066D08
Chromosome1 (Build37)
Map Location 118,652,090 - 118,652,330
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap5a
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066D08.T7 (MSMg01no066_d08.b1)MSMg01-066D08.TJ (MSMg01no066_d08.g1)
ACCAG291236AG291237
length733738
length of high quality
(start - end)
241 (130 - 370)189 (100 - 288)
definitionCHROMAT_FILE: MSMg01no066_d08.b1 PHD_FILE: MSMg01no066_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:55 2005CHROMAT_FILE: MSMg01no066_d08.g1 PHD_FILE: MSMg01no066_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTTTTTTTTTTTCCCTTCCTTTTTTCCCCCCCNCTATCATCCCTCCT
TTTTNTTTGATGATGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAATAGACAGAAGGTAAGCTTCT
GAGTAGAAAGACTAGTTGGTAATGGAATTTAAGCATTTCTAGGGAACAGA
AACCCATGTGGTTTTAGAAAGATTAAGGTGAGAAAATTAATGTTGTAGAG
GTTCTCCGTTTAAAAGAAATTCAAGAGGTTTGCCTTTAATAATAAAAATT
GGTGAAATAAATTTCAAAAATGTGTTGAAGAGATGGCTTAGAAAAGGAAG
TGCTTTGAACCCAAGTCAGATGTGTTCTGTGTACAGATTTTCTGCACCCC
ACAAAATTCTGGATTGTTAGGTGTGCTTCTGTAATCACAGCACTTGGAAC
AGGAATTAGTGAAACAGAGTGTTACCTGCAATTCCTTGGGCATCTAGTCT
CACCATAATTATGAGCTAGAAACTCCATGAGTGGTATTTGTCCCTGAAAA
ATAAGGTAGTGTTTAGTGAAATGTTTCGGTACACAAGTATTTTAAATACC
TGCTCTGTACATGTCATAGGCTGACAGCCTTCTTCCTCAAATTTCCTCTA
TTCTTTTCCCAATTTTTTTGGTGCTATTCATGCATATTCCAACTTTATTT
ATAATCGCCCTCTGCGTTTAACACGCTTCTCCC
CCCCCCCCNNCCCNCCCCCCCCCCCCCCCNNTCACNNCCNNCCCCCATTT
CCCCCCTCTCATATTTGCGGCGCTAAACGACTCCTATTTCTAGAAATCCG
CGGAATTCCATAGATTACCCTGTCTGATTTTTTTTAATACCATGCAGTTT
TTATTACTGTAGCTCTGTAGTCCAGCTTAGAATCAGCGATGCTGATGCTT
CTGAACATCCTTTTATTATACAGGATTGTTTTAGATATCCTAGGCTTTTT
GTTTTTCTCTATGAAGTTGACTATTGTTCTTTCAAGGTCTGTAGAGAATT
GTGTTGCCATTTTGATGGAGCTTGCATTGAATCCGTACACTGATTCTTGT
AGGATGATCATATTTACTGCTAATCTTACCCATCCATGAGCGTAATATAT
CTTTCCTTTTCCTGATATCCCCTATTTCCTTCTTCAAAGACTTGAGGCCT
CTATCATATATGTCCTTCACTTGCTTATCCTGAGTGACCCCAGTATATAT
TATACTATTTGCTGCTCCTGTGATGGACGTTGTTTTTCTTATTCCTGTCT
CCCTTTTGATCTTTGTATATACCAGTGTCCATTGATCAGCTCCTCGATGT
ACTGAAACTTAACTATATTTTGTATCCAGCCCTCTTATATTGAACATGCT
TTATCCAGCTGTTTGATCTTCTGTATCACTACTCTTTAGTCCTTCCTTAT
GCCTCCTTTTCTACCTTAACTTATTTCTATTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_d08.b1 MSMg01no066_d08.b1 CHROMAT_FILE:
MSMg01no066_d08.b1 PHD_FILE: MSMg01no066_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:55 2005
         (241 letters)



>mm_chr1_118651890_118652530
          Length = 641

 Score =  427 bits (221), Expect = e-124
 Identities = 236/241 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagacagaaggtaagcttctgagtagaaagactagttggtaatggaatttaagcatttc 60
           ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 atagacagaaggtaagcttgtgagtagaaagactagttggtactggaatttaagcatttc 382

                                                                       
Query: 61  tagggaacagaaacccatgtggttttagaaagattaaggtgagaaaattaatgttgtaga 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 tagggaacagaaacccatgtggttttagaaagtttaaggtgagaaaattaatgttgtaga 322

                                                                       
Query: 121 ggttctccgtttaaaagaaattcaagaggtttgcctttaataataaaaattggtgaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 ggttctccgtttaaaagaaattcaagaggtttgcctttaataataaaaaatggtgaaata 262

                                                                       
Query: 181 aatttcaaaaatgtgttgaagagatggcttagaaaaggaagtgctttgaacccaagtcag 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 aatttcaaaaatgtgttgaagagatggcttagaaaatgaagtgctttgaacccaagtcag 202

            
Query: 241 a 241
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)